pareMatrix: This function pares down a given rf matrix by keeping or...
In mckaylab/TSPmap: A tool making use of traveling salesperson problem solvers in the efficient and accurate construction of high-density genetic linkage maps
Description
Usage
Arguments
Value
Description
This function pares down a given rf matrix by keeping or removing the markers that are not in the provided subtour.
This is used when we want to pass a subset of the markers into a TSP solver.
Usage
1
pareMatrix(rfmatrix, markerIndexList, keep, clusters)
Arguments
rfmatrix
- matrix of recombination frequency values produced by the rfmatrix.R/computeRFmat function
markerIndexList
- list of the indices of the markers that you want to be included in the pared down matrix. NOTE: this list is most easily obtained by using the cutpoint array that is produced by the cutpoints.R/findcuts function.
keep
(OPTIONAL) - this flag indicates whether you want to keep the markers that are in the markerIndexList, or discard them.
clusters
(OPTIONAL) - this flag indicates whether you are passing in a cluster of marker ids or a markerlist.
Value
submatrix of rfmatrix that only includes or excludes the markers given in markerIndexList, depending on the value of the keep flag.
mckaylab/TSPmap documentation built on Aug. 19, 2021, 8:38 p.m.
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Description Usage Arguments Value
Description
This function pares down a given rf matrix by keeping or removing the markers that are not in the provided subtour. This is used when we want to pass a subset of the markers into a TSP solver.
Usage
1 | pareMatrix(rfmatrix, markerIndexList, keep, clusters)
|
Arguments
rfmatrix |
- matrix of recombination frequency values produced by the rfmatrix.R/computeRFmat function |
markerIndexList |
- list of the indices of the markers that you want to be included in the pared down matrix. NOTE: this list is most easily obtained by using the cutpoint array that is produced by the cutpoints.R/findcuts function. |
keep |
(OPTIONAL) - this flag indicates whether you want to keep the markers that are in the markerIndexList, or discard them. |
clusters |
(OPTIONAL) - this flag indicates whether you are passing in a cluster of marker ids or a markerlist. |
Value
submatrix of rfmatrix that only includes or excludes the markers given in markerIndexList, depending on the value of the keep flag.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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