findZeroes: Identify redundant markers in the solution object that have...

Description Usage Arguments Value

View source: R/findZeros.R

Description

This function creates a list of markers in the solution marker list which have 0 recombination frequency with their neighbors, so that they can be removed. NOTE: after running this function, the redundant marker list need to be removed from the solution marker list, the rf matrix, and the raw data object. This can be done with the removeMarkers function, the pareMatrix function, and the removedups function, respectively.

Usage

1
findZeroes(TSPsolution, rfmat)

Arguments

TSPsolution

- TSP solution object, produced by the TSPinterface.R/processConcordeOutput or TSPinterface.R/processLKHOutput functions

rfmat

recombination frequency matrix

Value

List of marker indices that can be removed.


mckaylab/TSPmap documentation built on Aug. 19, 2021, 8:38 p.m.