findZeroes: Identify redundant markers in the solution object that have...
In mckaylab/TSPmap: A tool making use of traveling salesperson problem solvers in the efficient and accurate construction of high-density genetic linkage maps
Description
Usage
Arguments
Value
Description
This function creates a list of markers in the solution marker list which have 0 recombination frequency with their neighbors, so that they can be removed.
NOTE: after running this function, the redundant marker list need to be removed from the solution marker list, the rf matrix, and the raw data object. This can be done with the removeMarkers function, the pareMatrix function, and the removedups function, respectively.
Usage
1
findZeroes(TSPsolution, rfmat)
Arguments
TSPsolution
- TSP solution object, produced by the TSPinterface.R/processConcordeOutput or TSPinterface.R/processLKHOutput functions
rfmat
recombination frequency matrix
Value
List of marker indices that can be removed.
mckaylab/TSPmap documentation built on Aug. 19, 2021, 8:38 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
This function creates a list of markers in the solution marker list which have 0 recombination frequency with their neighbors, so that they can be removed. NOTE: after running this function, the redundant marker list need to be removed from the solution marker list, the rf matrix, and the raw data object. This can be done with the removeMarkers function, the pareMatrix function, and the removedups function, respectively.
Usage
1 | findZeroes(TSPsolution, rfmat)
|
Arguments
TSPsolution |
- TSP solution object, produced by the TSPinterface.R/processConcordeOutput or TSPinterface.R/processLKHOutput functions |
rfmat |
recombination frequency matrix |
Value
List of marker indices that can be removed.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.