reorderMarkers: Reorder raw marker data

Description Usage Arguments Value

Description

Reorders raw markerdata and adds linkage group and marker position based on TSPmap results, if written as .csv can be imported to R/qtl by qtl:read.cross() adds a numbered index column before genotype matrix

Usage

1
reorderMarkers(rawdata, distancedf)

Arguments

rawdata

markerdata used to create map

distancedf

dataframe containing markernames (markername) distances ('Haldane (cM)') and groups (groupname) of markers

Value

data.frame of markers properly ordered with linkage group and position


mckaylab/TSPmap documentation built on May 22, 2019, 3:03 p.m.