Reorders raw markerdata and adds linkage group and marker position based on TSPmap results, if written as .csv can be imported to R/qtl by qtl:read.cross() adds a numbered index column before genotype matrix
markerdata used to create map
dataframe containing markernames (markername) distances ('Haldane (cM)') and groups (groupname) of markers
data.frame of markers properly ordered with linkage group and position
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