reorderMarkers: Reorder raw marker data
In mckaylab/TSPmap: A tool making use of traveling salesperson problem solvers in the efficient and accurate construction of high-density genetic linkage maps
Description
Usage
Arguments
Value
View source: R/reorderMarkers.R
Description
Reorders raw markerdata and adds linkage group and marker position based on TSPmap results, if written as .csv can be imported to R/qtl by qtl:read.cross()
adds a numbered index column before genotype matrix
Usage
1
reorderMarkers(rawdata, distancedf)
Arguments
rawdata
markerdata used to create map
distancedf
dataframe containing markernames (markername) distances ('Haldane (cM)') and groups (groupname) of markers
Value
data.frame of markers properly ordered with linkage group and position
mckaylab/TSPmap documentation built on Aug. 19, 2021, 8:38 p.m.
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Description Usage Arguments Value
View source: R/reorderMarkers.R
Description
Reorders raw markerdata and adds linkage group and marker position based on TSPmap results, if written as .csv can be imported to R/qtl by qtl:read.cross() adds a numbered index column before genotype matrix
Usage
1 | reorderMarkers(rawdata, distancedf)
|
Arguments
rawdata |
markerdata used to create map |
distancedf |
dataframe containing markernames (markername) distances ('Haldane (cM)') and groups (groupname) of markers |
Value
data.frame of markers properly ordered with linkage group and position
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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