processLKHOutput: Process LKH solution file.
In mckaylab/TSPmap: A tool making use of traveling salesperson problem solvers in the efficient and accurate construction of high-density genetic linkage maps
Description
Usage
Arguments
Value
View source: R/processLKHOutput.R
Description
Process LKH solution file.
Usage
1
processLKHOutput(filename, markerdata, rfmat)
Arguments
filename
- path and name of LKH solution file, which is returned from the function callLKH (this file has a .LKH extension)
markerdata
- main marker data file, produced by either the readfile.R/readFile function or the duplicatemarkers.R/removedups function
rfmat
- recombination frequency matrix, produced by the rfmatrix.R/computeRFmat function
Value
TSP solution object, containing:
1. the index of the markers in the main marker data object
2. marker name
3. rf value between each marker and the next
4. cumulative rf value
mckaylab/TSPmap documentation built on Aug. 19, 2021, 8:38 p.m.
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Description Usage Arguments Value
View source: R/processLKHOutput.R
Description
Process LKH solution file.
Usage
1 | processLKHOutput(filename, markerdata, rfmat)
|
Arguments
filename |
- path and name of LKH solution file, which is returned from the function callLKH (this file has a .LKH extension) |
markerdata |
- main marker data file, produced by either the readfile.R/readFile function or the duplicatemarkers.R/removedups function |
rfmat |
- recombination frequency matrix, produced by the rfmatrix.R/computeRFmat function |
Value
TSP solution object, containing: 1. the index of the markers in the main marker data object 2. marker name 3. rf value between each marker and the next 4. cumulative rf value
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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