Description Usage Arguments Value
This function reads in a raw data file from disk. This is the only place where data are brought into the package, all calculations are done from these data. File format: 1. Tab-separated or comma-separated file 2. Markers are arranged in rows 3. One header row which can be discarded 4. One header column with the marker names as strings 5. OPTIONAL: A second column which can also be discarded (this column typically has the string "(a,b)" in each cell). If this column is not present, set the classificationFlag parameter to FALSE.
1 | readFile(filename,classificationFlag,transpose)
|
filename |
- path and input filename as a string |
classificationFlag |
- flag to indicate whether the 2nd column in the data file is the classification column, which will be discarded. Default is TRUE. |
transpose |
- flag to indicate whether or not the data needs to be transposed. Default is TRUE. |
main marker data object
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