plotHeatmap: Plot heatmap

Description Usage Arguments

Description

Plot heatmap Acknowledgment: Implementation was based on the DoHeatmap function in Seurat

Usage

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plotHeatmap(object, genes = NULL, cells = NULL, scaled = T,
  do.log2 = FALSE, order.by.group = T, minmax = c(-1, 1),
  show.labCol = FALSE, show.labRow = FALSE, ...)

Arguments

object

A sincera object

genes

The expression patterns of genes to be shown in the heatmap If NULL, set to all genes

cells

The cells to be shown in the heatmap. If NULL, set to all cells

scaled

If TRUE, use scaled expression

do.log2

IF TRUE, apply log2 transformatoin to the expression

order.by.group

IF TRUE, order cells based on their GROUP information

minmax

The minimum and maximum values for color scale

show.labRow

If TRUE, show the row labels

show.labcol

If TRUE, show the column lables


minzheguo/SINCERA documentation built on Feb. 3, 2021, 2:31 p.m.