getRheaMetabolitesForProteins: getRheaEnzymesAndTransportersForMetabolites returns proteins...

In ncats/RaMP-DB: RaMP (Relational Database of Metabolomic Pathways)

getRheaEnzymesAndTransportersForMetabolites returns proteins that are either enzymes or transporters that are reaction participants with the input metabolite ids.

Description

getRheaEnzymesAndTransportersForMetabolites returns proteins that are either enzymes or transporters that are reaction participants with the input metabolite ids.

Usage

getRheaMetabolitesForProteins(
  db = RaMP(),
  analytes,
  includeRheaRxnDetails = F,
  humanProteins = T
)

Arguments

db	a RaMP databse object
analytes	analyte id vector
includeRheaRxnDetails	returns additional columns that inlucdes info in the reaction connecting mets and proteins
humanProteins	require reactions to have a human protein (enzyme or transporter), default True

Value

returns a dataframe object with input metabolites, and reaction and associated protein informatin.

ncats/RaMP-DB documentation built on April 28, 2024, 3:28 a.m.