API for nickytong/GenAnalysis
Genomic Analysis
| Global functions | |
|---|---|
| BootstrapGenes | Man page |
| Getter | Man page Source code |
| RPPAdat | Man page |
| SIBER2 | Man page |
| WriteXLSOR | Man page Source code |
| WriteXLS_array | Source code |
| WriteXLS_arrayOR | Man page Source code |
| WriteXLS_file | Source code |
| WriteXLS_list | Source code |
| WriteXLS_listOR | Man page Source code |
| aMatrix | Man page Source code |
| aheatmap | Man page Source code |
| aheatmap2 | Man page Source code |
| aheatmat | Man page Source code |
| aheatmatcor | Man page Source code |
| anovaP | Man page |
| aoMatrix | Man page Source code |
| augmentMatrixColumnByID | Man page Source code |
| augmentMatrixColumnByID_update | Man page Source code |
| augmentMatrixRowByID | Man page Source code |
| autocolpal | Source code |
| autocolpal4DF | Man page Source code |
| buildSilhouette | Man page Source code |
| buildapp | Man page Source code |
| buildapp0 | Man page Source code |
| cat_cat_bar | Source code |
| cat_cat_pie | Source code |
| categorizePvec | Man page |
| cluster_mat | Man page Source code |
| colorpalette2colvec | Man page |
| combine_cormat | Man page Source code |
| compareNames | Source code |
| convert_annotations | Man page Source code |
| cophCorFromConsMat | Man page Source code |
| copheneticCoef | Man page Source code |
| corTest | Man page Source code |
| coxphP2 | Man page |
| createSurvivalFrame | Source code |
| createSurvivalFrame0 | Source code |
| create_bum | Man page Source code |
| decideOrder | Man page Source code |
| df_force_factor | Man page Source code |
| df_format_df | Man page Source code |
| dichotomizeExpr | Man page Source code |
| dichotomizeExpr_BI | Man page Source code |
| dichotomizeExpr_quantile | Man page Source code |
| dispersionFromConsMat | Man page Source code |
| distanceMatrix2 | Source code |
| doccoRmd | Man page Source code |
| draw_annotation_legend | Source code |
| draw_annotations | Source code |
| draw_colnames | Source code |
| draw_dendrogram | Source code |
| draw_legend | Source code |
| draw_main | Source code |
| draw_matrix | Source code |
| draw_rownames | Source code |
| duplicated2 | Source code |
| emptydfFromDF | Man page Source code |
| ensureClusterIndex | Source code |
| fitSIBERonMat | Man page |
| fitSIBERonMat_Bygroup | Man page |
| fn_TWanova | Man page |
| formatAnnotation4aheatmap | Man page Source code |
| formatDF | Man page Source code |
| formatLevel | Man page |
| formatVec | Man page Source code |
| genbreaks | Man page Source code |
| generate_annotation_colours | Source code |
| generate_breaks | Man page Source code |
| generate_breaks0 | Man page Source code |
| getDefaultBarColList | Man page Source code |
| getName | Source code |
| getPvecSmry | Man page Source code |
| getTopNindex | Man page Source code |
| getTopNvalue | Man page Source code |
| get_pal | Man page Source code |
| get_stretch | Man page Source code |
| getfisherP | Man page |
| getter | Source code |
| getter.augMat | Man page Source code |
| getter.colpal4DF | Man page Source code |
| getter.rowanovaMatVec | Man page |
| getter.rowcorMatVec | Man page Source code |
| getter.rowttestMatVec | Man page |
| ggKM | Man page Source code |
| ggKMcat | Man page Source code |
| guessAlpha | Man page Source code |
| guessAlpha_line | Man page Source code |
| guessCEX | Man page Source code |
| guess_angle | Man page Source code |
| guess_nrowL | Man page Source code |
| heatm | Man page |
| heatm.rowcorMatVec | Man page Source code |
| heatm.rowttestMatVec | Man page |
| heatmap_motor | Source code |
| hist.rowTWanovaMatVec | Man page |
| hist.rowanovaMatVec | Man page |
| hist.rowcorMatVec | Man page Source code |
| hist.rowfisherMatVec | Man page |
| hist.rowpairedttestMatVec | Man page |
| hist.rowttestMatVec | Man page |
| isCat | Source code |
| isCont | Man page Source code |
| isTopN | Man page Source code |
| is_continuous | Man page Source code |
| iscat | Man page Source code |
| iscatDF | Man page Source code |
| ismapcat | Source code |
| ispaloverflow | Source code |
| ixglobal2local | Man page Source code |
| ixlocal2global | Man page Source code |
| ixunify2index | Man page Source code |
| kmeans_aheatmap | Source code |
| lm_xy | Man page |
| lo | Source code |
| logic2sortedIndex | Man page Source code |
| longVec2short | Source code |
| makeColMat | Man page Source code |
| makestring | Man page Source code |
| mapNames | Man page Source code |
| mapNames4mat | Man page Source code |
| maskByLimit | Man page Source code |
| mylibrary | Man page Source code |
| n_unique | Man page Source code |
| name of the vec as in the named list of colpal | Man page |
| namedColVec | Man page Source code |
| noNA | Man page Source code |
| nonNumeric2FactorByColumn | Man page Source code |
| overwritef | Man page Source code |
| pairedttestP | Man page |
| parse_coxphP2 | Man page |
| pdfOR | Man page Source code |
| plainRmd | Man page Source code |
| plot.colpal4DF | Man page Source code |
| plot.fn_TWanova | Man page |
| plot.phm | Man page Source code |
| plot.prepcolbar | Man page Source code |
| plot.rowanovaMatVec | Man page |
| plot.rowcorMatVec | Man page Source code |
| plot.rowttestMatVec | Man page |
| plot4rowanovaMatVec | Man page |
| plot4rowcorMatVec | Man page Source code |
| plot4rowttestMatVec | Man page |
| plotBumFDR | Man page Source code |
| plotBumFDR0 | Source code |
| plotCCC | Man page Source code |
| plotCatCat | Man page Source code |
| plotContCat | Man page Source code |
| plotContCont | Man page Source code |
| plotHeatmap | Man page Source code |
| plotHeatmapTable | Man page Source code |
| plotKM | Man page Source code |
| plotKM0 | Man page Source code |
| plotMeanSD4mat | Man page Source code |
| plotScatter | Man page Source code |
| plotSummaryFromConsensusClusterPlus | Man page Source code |
| polrP | Man page |
| prepDat4pairedttest | Man page |
| prepare4ColList | Man page Source code |
| prepare4aheatmap | Man page Source code |
| prepcolbar | Man page Source code |
| print.phm | Man page Source code |
| printPvecSmry | Man page Source code |
| qplot_survival | Source code |
| rcor | Man page Source code |
| rcorrMat | Source code |
| rcorrTest | Man page Source code |
| rowMatVecDo | Man page |
| rowTWanovaMatVec | Man page |
| rowanovaMatVec | Man page |
| rowcorMatMat_L | Man page Source code |
| rowcorMatVec | Man page Source code |
| rowcorMatVec_Bygroup | Man page |
| rowdoMatVec_Bygroup | Man page Source code |
| rowfisherMatVec | Man page |
| rowkmMatVec | Man page |
| rowlmMatVec | Man page |
| rowpairedttestMatVec | Man page |
| rowranktestMatVec | Man page |
| rowttestMatMat_L | Man page Source code |
| rowttestMatVec | Man page |
| s_unique | Man page Source code |
| safelog | Man page Source code |
| saveOR | Man page Source code |
| scale_colours | Source code |
| scale_mat | Man page Source code |
| scale_rows | Source code |
| scale_vec_colours | Source code |
| scatter | Man page |
| scatter.rowTWanovaMatVec | Man page |
| scatter.rowanovaMatVec | Man page |
| scatter.rowcorMatVec | Man page Source code |
| scatter.rowfisherMatVec | Man page |
| scatter.rowkmMatVec | Man page |
| scatter.rowpairedttestMatVec | Man page |
| scatter.rowttestMatVec | Man page |
| scatter_rowTWanovaMatVec | Man page |
| scatter_rowanovaMatVec | Man page |
| scatter_rowcorMatVec | Man page Source code |
| scatter_rowttestMatVec | Man page |
| selectGeneFromMeanSD | Man page Source code |
| showDuplicateInfo | Source code |
| showWithRestrict | Source code |
| statContCont | Man page Source code |
| str_extract2 | Man page Source code |
| subsetMainMat | Man page Source code |
| swap | Man page Source code |
| testObject | Man page Source code |
| test_tree_split | Man page Source code |
| testree | Man page Source code |
| testree.phm | Man page Source code |
| theme_base | Man page |
| toFC | Man page |
| toNaturalVar | Man page Source code |
| transform_smat | Man page Source code |
| tree2dendro | Source code |
| truncByLimit | Man page Source code |
| truncByQuantile | Man page Source code |
| truncMat | Man page Source code |
| ttestP | Man page |
| updatePal | Man page Source code |
| updateRowname | Source code |
| vec2colvec | Man page Source code |
| vec2namedList | Source code |
| vecpal2map | Man page Source code |
| venndiagram | Man page |
| venndiagram.rowTWanovaMatVec | Man page |
| vplayout | Source code |
| whichCat | Man page Source code |
| whichCont | Man page Source code |
| wilcoxP | Man page |
| write.csvOR | Man page Source code |
