meffil.load.controls: Load control probes

In perishky/meffil: Efficient algorithms for DNA methylation

Load control probes

Description

Load control probes

Usage

meffil.load.controls(
  samplesheet,
  chip = NA,
  featureset = chip,
  verbose = F,
  ...
)

Arguments

samplesheet	Sample info (see meffil.read.samplesheet or meffil.create.samplesheet).
chip	Name returned by meffil.list.chips() (Default: NA).
featureset	Name returned by meffil.list.featuresets() (Default: chip).
verbose	(Default: FALSE).
...	Arguments to mclapply.

Value

List containing two elements: probes and values. The probes item is a data frame describing the control probes. The values item is a matrix providing the intensities of the control probes for each samples (rows=probes, columns=samples).

perishky/meffil documentation built on June 9, 2024, 5:59 p.m.