meffil.load.controls: Load control probes
In perishky/meffil: Efficient algorithms for DNA methylation

meffil.load.controls

R Documentation

Load control probes

Description

Load control probes

Usage

meffil.load.controls(
  samplesheet,
  chip = NA,
  featureset = chip,
  verbose = F,
  ...
)

Arguments

`samplesheet`	Sample info (see `meffil.read.samplesheet` or `meffil.create.samplesheet`).
`chip`	Name returned by `meffil.list.chips()` (Default: `NA`).
`featureset`	Name returned by `meffil.list.featuresets()` (Default: `chip`).
`verbose`	(Default: FALSE).
`...`	Arguments to mclapply.

Value

List containing two elements: probes and values. The probes item is a data frame describing the control probes. The values item is a matrix providing the intensities of the control probes for each samples (rows=probes, columns=samples).

perishky/meffil documentation built on May 10, 2024, 6:40 a.m.