meffil.load.raw.data: Load raw beta matrix

In perishky/meffil: Efficient algorithms for DNA methylation

Load raw beta matrix

Description

Load raw beta matrix

Usage

meffil.load.raw.data(
  qc.objects,
  pseudo = 100,
  just.beta = T,
  max.bytes = 2^30 - 1,
  verbose = F,
  ...
)

Arguments

qc.objects	A list of outputs from meffil.create.qc.object().
pseudo	Value to add to the denominator to make the methylation estimate more stable when calculating methylation levels (Default: 100).
just.beta	If TRUE, then return just the methylation levels; otherwise, return the methylated and unmethylated matrices (Default: TRUE).
verbose	If TRUE, then detailed status messages are printed during execution (Default: FALSE).
...	Arguments passed to mclapply().

Value

If just.beta == TRUE, the matrix of methylation levels between between 0 and 1 equal to methylated signal/(methylated + unmethylated signal + pseudo). Otherwise, a list containing two matrices, the methylated and unmethylated signals.

perishky/meffil documentation built on June 9, 2024, 5:59 p.m.