meffil.normalization.parameters: Specify parameters for testing normalization

View source: R/normalization-report.r

meffil.normalization.parametersR Documentation

Specify parameters for testing normalization

Description

Specify parameters for testing normalization

Usage

meffil.normalization.parameters(
  norm.objects,
  variables = guess.batch.vars(norm.objects),
  control.pcs = 1:10,
  batch.pcs = 1:10,
  batch.threshold = 1e-50,
  colours = NULL
)

Arguments

norm.objects

Output from meffil.normalize.quantiles

variables

Default = guess.batch.vars(norm). Which variables in sample sheet to test

control.pcs

Default = 1:10. Number of control PCs to test against batch variables

colours

Colours to use for scatterplots.

Value

List of parameters


perishky/meffil documentation built on June 9, 2024, 5:59 p.m.