meffil.normalization.parameters: Specify parameters for testing normalization

In perishky/meffil: Efficient algorithms for DNA methylation

Specify parameters for testing normalization

Description

Specify parameters for testing normalization

Usage

meffil.normalization.parameters(
  norm.objects,
  variables = guess.batch.vars(norm.objects),
  control.pcs = 1:10,
  batch.pcs = 1:10,
  batch.threshold = 1e-50,
  colours = NULL
)

Arguments

norm.objects	Output from meffil.normalize.quantiles
variables	Default = guess.batch.vars(norm). Which variables in sample sheet to test
control.pcs	Default = 1:10. Number of control PCs to test against batch variables
colours	Colours to use for scatterplots.

Value

List of parameters

perishky/meffil documentation built on March 20, 2024, 1:56 a.m.