meffil.normalization.summary.from.betas: Perform tests to check normalization performance

In perishky/meffil: Efficient algorithms for DNA methylation

Perform tests to check normalization performance

Description

Perform tests to check normalization performance

Usage

meffil.normalization.summary.from.betas(
  pcs,
  parameters = meffil.normalization.parameters.from.betas(),
  samplesheet = samplesheet,
  variables = variables,
  verbose = TRUE
)

Arguments

pcs	Output from meffil.methylation.pcs() applied to the normalized methylation matrix
parameters	Default = meffil.normalization.parameters.from.betas(). Report parameters.
samplesheet	Default = NULL. Data frame of variables to compare to principal components (pcs). Must contain nrow(pcs) == nrow(samplesheet) rows. Columns that are not factors are ignored.
variables	Which variables in sample sheet to test
verbose	Default = TRUE

Value

List of tables and graphs.

perishky/meffil documentation built on June 9, 2024, 5:59 p.m.