meffil.normalization.summary.from.betas: Perform tests to check normalization performance

View source: R/normalization-report.from.betas.r

meffil.normalization.summary.from.betasR Documentation

Perform tests to check normalization performance

Description

Perform tests to check normalization performance

Usage

meffil.normalization.summary.from.betas(
  pcs,
  parameters = meffil.normalization.parameters.from.betas(),
  samplesheet = samplesheet,
  variables = variables,
  verbose = TRUE
)

Arguments

pcs

Output from meffil.methylation.pcs() applied to the normalized methylation matrix

parameters

Default = meffil.normalization.parameters.from.betas(). Report parameters.

samplesheet

Default = NULL. Data frame of variables to compare to principal components (pcs). Must contain nrow(pcs) == nrow(samplesheet) rows. Columns that are not factors are ignored.

variables

Which variables in sample sheet to test

verbose

Default = TRUE

Value

List of tables and graphs.


perishky/meffil documentation built on June 9, 2024, 5:59 p.m.