meffil.normalize.sample: Normalize Infinium HumanMethylation450 BeadChip
In perishky/meffil: Efficient algorithms for DNA methylation
View source: R/normalize-sample.r
meffil.normalize.sample R Documentation
Normalize Infinium HumanMethylation450 BeadChip
Description
Normalize sample methylation data using normalized quantiles.
Usage
meffil.normalize.sample(norm.object, remove.poor.signal = F, verbose = F)
Arguments
norm.object
An element of meffil.normalize.quantiles().
remove.poor.signal
Set methylation values for poorly detected probes
to missing (Default: FALSE). Poor signal was
identified during QC by meffil.qc()
as signal that failed to pass the
detection p-value threshold (detection.threshold)
or bead threshold (bead.threshold).
verbose
If TRUE, then status messages are printed during execution (Default: FALSE).
Value
List containing normalized methylated and unmethylated signals.
perishky/meffil documentation built on June 9, 2024, 5:59 p.m.
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View source: R/normalize-sample.r
| meffil.normalize.sample | R Documentation |
Normalize Infinium HumanMethylation450 BeadChip
Description
Normalize sample methylation data using normalized quantiles.
Usage
meffil.normalize.sample(norm.object, remove.poor.signal = F, verbose = F)
Arguments
norm.object |
An element of |
remove.poor.signal |
Set methylation values for poorly detected probes
to missing (Default: |
verbose |
If |
Value
List containing normalized methylated and unmethylated signals.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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