meffil.pcs: Calculate control probe PCs

View source: R/design-matrix.r

meffil.pcsR Documentation

Calculate control probe PCs

Description

Calculate control probe PCs

Usage

meffil.pcs(qc.objects, fixed.effects = NULL, random.effects = NULL)

Arguments

qc.objects

A list of outputs from meffil.create.qc.object().

fixed.effects

Names of columns in samplesheet that should be included as fixed effects along with control matrix principal components (Default: NULL).

random.effects

Names of columns in samplesheet that should be included as random effects (Default: NULL).

Value

PCA of control probes


perishky/meffil documentation built on June 9, 2024, 5:59 p.m.