meffil.plot.cell.counts: Cell count estimate quality plot

In perishky/meffil: Efficient algorithms for DNA methylation

Cell count estimate quality plot

Description

Cell count estimate quality plot

Usage

meffil.plot.cell.counts(qc.objects)

Arguments

qc.objects	Output from meffil.qc().
reference	Object describing methylation profiles of purified cell populations obtained from meffil.add.cell.type.reference().

Value

Two ggplot2 boxplot objects:

• betas Contains one box per sample or reference cell type representing the distribution of methylation levels for the CpG sites used to estimate cell counts.

• counts Contains one box per reference cell type representing the distribution of cell count estimates across the samples.

perishky/meffil documentation built on March 20, 2024, 1:56 a.m.