meffil.plot.meth.unmeth: Plot average methylated vs unmethylated levels for each...
In perishky/meffil: Efficient algorithms for DNA methylation
meffil.plot.meth.unmeth R Documentation
Plot average methylated vs unmethylated levels for each individuals
Description
plot raw control probes and fit linear regression, remove samples that have sd(y - yhat) > mean*3
Usage
meffil.plot.meth.unmeth(qc.objects, outlier.sd = 3, colour.code = NULL)
Arguments
qc.objects
From meffil.qc
outlier.sd
Cut off for declaring outliers. Default = 3
colour.code
Array of length n samples to colour code points. Defaults to NULL
Value
Data frame of results plus plot
perishky/meffil documentation built on March 20, 2024, 1:56 a.m.
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| meffil.plot.meth.unmeth | R Documentation |
Plot average methylated vs unmethylated levels for each individuals
Description
plot raw control probes and fit linear regression, remove samples that have sd(y - yhat) > mean*3
Usage
meffil.plot.meth.unmeth(qc.objects, outlier.sd = 3, colour.code = NULL)
Arguments
qc.objects |
From |
outlier.sd |
Cut off for declaring outliers. Default = 3 |
colour.code |
Array of length n samples to colour code points. Defaults to NULL |
Value
Data frame of results plus plot
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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