meffil.plot.meth.unmeth: Plot average methylated vs unmethylated levels for each...

meffil.plot.meth.unmethR Documentation

Plot average methylated vs unmethylated levels for each individuals

Description

plot raw control probes and fit linear regression, remove samples that have sd(y - yhat) > mean*3

Usage

meffil.plot.meth.unmeth(qc.objects, outlier.sd = 3, colour.code = NULL)

Arguments

qc.objects

From meffil.qc

outlier.sd

Cut off for declaring outliers. Default = 3

colour.code

Array of length n samples to colour code points. Defaults to NULL

Value

Data frame of results plus plot


perishky/meffil documentation built on June 9, 2024, 5:59 p.m.