meffil.plot.probe.batch.from.betas: Test normalized betas for association with known batch...

View source: R/normalization-report.from.betas.r

meffil.plot.probe.batch.from.betasR Documentation

Test normalized betas for association with known batch variables

Description

Performs association of each of n PCs calculated from most variable CpG sites (after normalization) against each of m measured batch variables

Usage

meffil.plot.probe.batch.from.betas(
  samplesheet,
  variables,
  pcs,
  batch.threshold = batch.threshold,
  cols = NULL,
  verbose = T
)

Arguments

variables

Which variables in sample sheet to test

pcs

Output from meffil.methylation.pcs() applied to the normalized methylation matrix

samplesheet.

Data frame containing variables to test for association with PCs. Must have nrow(pcs) == nrow(samplesheet).

verbose=T

Print progress messages?

Value

List of table of results and graph


perishky/meffil documentation built on June 9, 2024, 5:59 p.m.