meffil.plot.probe.batch.from.betas: Test normalized betas for association with known batch...

In perishky/meffil: Efficient algorithms for DNA methylation

Test normalized betas for association with known batch variables

Description

Performs association of each of n PCs calculated from most variable CpG sites (after normalization) against each of m measured batch variables

Usage

meffil.plot.probe.batch.from.betas(
  samplesheet,
  variables,
  pcs,
  batch.threshold = batch.threshold,
  cols = NULL,
  verbose = T
)

Arguments

variables	Which variables in sample sheet to test
pcs	Output from meffil.methylation.pcs() applied to the normalized methylation matrix
samplesheet.	Data frame containing variables to test for association with PCs. Must have nrow(pcs) == nrow(samplesheet).
verbose=T	Print progress messages?

Value

List of table of results and graph

perishky/meffil documentation built on June 9, 2024, 5:59 p.m.