meffil.save.detection.pvalues: Save detection p-value matrix to GDS file

In perishky/meffil: Efficient algorithms for DNA methylation

Save detection p-value matrix to GDS file

Description

Save detection p-value matrix to GDS file

Usage

meffil.save.detection.pvalues(
  qc.objects,
  gds.filename = NULL,
  max.bytes = 2^30 - 1,
  verbose = F,
  ...
)

Arguments

qc.objects	A list of outputs from meffil.create.qc.object().
gds.filename	If not NULL (default), then saves the output to a GDS (Genomic Data Structure). This is for cases where the output is too large to fit into main memory.
verbose	If TRUE, then detailed status messages are printed during execution (Default: FALSE).
...	Arguments passed to mclapply().

Value

Matrix of probe detection p-values. If gds.filename is not NULL, then the output is saved to the GDS file rather than retained in memory and returned. The library 'gdsfmt' must be installed in this case.

perishky/meffil documentation built on June 9, 2024, 5:59 p.m.