priviere/PPBstats
An R package to perform analysis found within PPB programmes

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An R package to perform analysis found within PPB programmes

.Rbuildignore
.github/CONTRIBUTING.md
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
PPBstats.Rproj
R/.Rhistory
R/GxE_build_interaction_matrix.R R/HA_to_LF.R R/LF_to_HA.R R/PPBstats-package.R R/PPBstats_interface.R R/biplot_data.R R/biplot_data.check_model_GxE.R R/biplot_data.check_model_hedonic.R R/biplot_data.check_model_napping.R R/check_model.R R/check_model.fit_model_GxE.R R/check_model.fit_model_anova.R R/check_model.fit_model_bh_GxE.R R/check_model.fit_model_bh_intra_location.R R/check_model.fit_model_bh_variance_intra.R R/check_model.fit_model_hedonic.R R/check_model.fit_model_home_away.R R/check_model.fit_model_local_foreign.R R/check_model.fit_model_napping.R R/check_model.fit_model_spatial.R R/common_functions.R R/comp.parameters.R R/cross_validation_model_bh_GxE.R R/design_experiment.R R/format_data_PPBstats.R R/format_data_PPBstats.data_agro.R R/format_data_PPBstats.data_agro_HA.R R/format_data_PPBstats.data_agro_LF.R R/format_data_PPBstats.data_agro_SR.R R/format_data_PPBstats.data_network.R R/format_data_PPBstats.data_organo_hedonic.R R/format_data_PPBstats.data_organo_napping.R R/get.at.least.X.groups.R R/get.env.info.R R/get.significant.groups.R R/ggplot_discrimitiveness_vs_representativeness.R R/ggplot_mean_vs_stability.R R/ggplot_which_won_where.R R/mean_comparisons.R R/mean_comparisons.check_model_GxE.R R/mean_comparisons.check_model_anova.R R/mean_comparisons.check_model_bh_GxE.R R/mean_comparisons.check_model_bh_intra_location.R R/mean_comparisons.check_model_hedonic.R R/mean_comparisons.check_model_home_away.R R/mean_comparisons.check_model_local_foreign.R R/mean_comparisons.check_model_spatial.R R/mean_comparisons.check_model_variance_intra.R R/mean_comparisons.predict_the_past_model_bh_GxE.R R/model_GxE.R R/model_anova.R R/model_bh_GxE.R R/model_bh_intra_location.R R/model_bh_variance_intra.R R/model_hedonic.R R/model_home_away.R R/model_local_foreign.R R/model_napping.R R/model_spatial.R R/multivariate.R R/parameter_groups.R R/parameter_groups_model_GxE.R R/parameter_groups_model_anova.R R/parameter_groups_model_bh_GxE.R R/parameter_groups_model_spatial.R R/plot.PPBstats.R R/plot.biplot_GxE.R R/plot.biplot_hedonic.R R/plot.biplot_napping.R R/plot.check_model_GxE.R R/plot.check_model_anova.R R/plot.check_model_bh_GxE.R R/plot.check_model_bh_intra_location.R R/plot.check_model_bh_variance_intra.R R/plot.check_model_hedonic.R R/plot.check_model_home_away.R R/plot.check_model_local_foreign.R R/plot.check_model_napping.R R/plot.check_model_spatial.R R/plot.cross_validation_model_bh_GxE.R R/plot.data_agro.R R/plot.data_agro_HA.R R/plot.data_agro_LF.R R/plot.data_agro_SR.R R/plot.data_network.R R/plot.data_organo_hedonic.R R/plot.data_organo_napping.R R/plot.mean_comparisons_model_GxE.R R/plot.mean_comparisons_model_anova.R R/plot.mean_comparisons_model_bh_GxE.R R/plot.mean_comparisons_model_bh_intra_location.R R/plot.mean_comparisons_model_hedonic.R R/plot.mean_comparisons_model_home_away.R R/plot.mean_comparisons_model_local_foreign.R R/plot.mean_comparisons_model_spatial.R R/plot.mean_comparisons_predict_the_past_model_bh_GxE.R R/plot.parameter_groups.R R/post_hoc_variation.R R/post_hoc_variation_model_GxE.R R/post_hoc_variation_model_anova.R R/post_hoc_variation_model_home_away.R R/post_hoc_variation_model_local_foreign.R R/post_hoc_variation_model_spatial.R R/predict_the_past_model_bh_GxE.R R/zzz.R README.Rmd README.md
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_pkgdown.yml
data/data_agro_HA.RData
data/data_agro_LF.RData
data/data_agro_SR_4.RData
data/data_hedonic.RData
data/data_model_GxE.RData
data/data_model_bh_GxE.RData
data/data_model_bh_intra_location.RData
data/data_model_bh_variance_intra.RData
data/data_model_spatial.RData
data/data_napping.RData
data/data_network_bipart.RData
data/data_network_unipart_location.RData
data/data_network_unipart_sl.RData
inst/.gitignore
inst/CITATION
inst/bookdown/.gitignore
inst/bookdown/.travis.yml
inst/bookdown/100-philo_pack.Rmd inst/bookdown/200-network.Rmd inst/bookdown/201-network_intro.Rmd inst/bookdown/202-network_unipart_seedlot.Rmd inst/bookdown/203-network_unipart_location.Rmd inst/bookdown/204-network_bipart.Rmd inst/bookdown/300-agro.Rmd inst/bookdown/301-agro_intro.Rmd inst/bookdown/302-agro_design_expe.Rmd inst/bookdown/303-agro_sow.Rmd inst/bookdown/304-agro_describe_data.Rmd inst/bookdown/305-agro_family_1.Rmd inst/bookdown/306-agro_classic_anova.Rmd inst/bookdown/307-agro_spatial_analysis.Rmd inst/bookdown/308-agro_ibd.Rmd inst/bookdown/309-agro_model_1.Rmd inst/bookdown/310-agro_family_2.Rmd inst/bookdown/311-agro_ammi.Rmd inst/bookdown/312-agro_gge.Rmd inst/bookdown/314-agro_model_2.Rmd inst/bookdown/315-agro_family_3.Rmd inst/bookdown/316-agro_model_3.Rmd inst/bookdown/317-agro_family_4.Rmd inst/bookdown/318-agro_response_to_selection.Rmd inst/bookdown/319-agro_local_adaptation.Rmd inst/bookdown/320-agro_variance_intra.Rmd inst/bookdown/321-agro_family_5.Rmd inst/bookdown/322-agro_multivariate_analysis.Rmd inst/bookdown/400-organo.Rmd inst/bookdown/401-organo_intro.Rmd inst/bookdown/402-organo_taste.Rmd inst/bookdown/403-organo_hedonic.Rmd inst/bookdown/404-organo_napping.Rmd inst/bookdown/405-organo_rank.Rmd inst/bookdown/500-molecular.Rmd inst/bookdown/600-communicate.Rmd inst/bookdown/700-tail.Rmd inst/bookdown/800-references.Rmd
inst/bookdown/_bookdown.yml
inst/bookdown/_output.yml
inst/bookdown/biblio.bib
inst/bookdown/bookdown/figures/Logo-RSP.png
inst/bookdown/bookdown/figures/cc-by-nc-sa.png
inst/bookdown/bookdown/figures/gpl3.png
inst/bookdown/data
inst/bookdown/figures/2011_notation_hiver_chez_BER.JPG
inst/bookdown/figures/2011_notation_recolte_CHD.JPG
inst/bookdown/figures/2014_recolte_chez_JSG.JPG
inst/bookdown/figures/FLM_2012.JPG
inst/bookdown/figures/Logo-Diversifood.jpg
inst/bookdown/figures/Logo-EU.jpg
inst/bookdown/figures/Logo-FdF.jpg
inst/bookdown/figures/Logo-INRA.jpg
inst/bookdown/figures/Logo-RSP.png
inst/bookdown/figures/Logo-SOLIBAM.jpg
inst/bookdown/figures/Logo-UMRGV.jpg
inst/bookdown/figures/Logo-maiage.png
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inst/bookdown/figures/cc-by-nc-sa.png
inst/bookdown/figures/decision-tree_Compare-different-varieties-evaluated-for-selection-in-different-locations_agro.tex
inst/bookdown/figures/decision-tree_Compare-different-varieties-evaluated-for-selection-in-different-locations_senso.tex
inst/bookdown/figures/decision-tree_Improve-the-prediction-of-a-target-variable-for-selection.tex
inst/bookdown/figures/decision-tree_Study-diversity-structure-and-identify-complementary-or-similar-parents-for-cross.tex
inst/bookdown/figures/decision-tree_Study-network-of-seed-circulation.tex
inst/bookdown/figures/decision-tree_Study-the-response-of-varieties-under-selection-over-several-environments.tex
inst/bookdown/figures/decision-tree_agro-fully-replicated-design.tex
inst/bookdown/figures/decision-tree_agro-ibd-design.tex
inst/bookdown/figures/decision-tree_agro-regional-and-satellite-design.tex
inst/bookdown/figures/decision-tree_agro-row-column-design.tex
inst/bookdown/figures/decision-tree_all-head.tex
inst/bookdown/figures/decision-tree_all.tex
inst/bookdown/figures/japhabelle8.JPG
inst/bookdown/figures/main-functions-agro-family-1.tex
inst/bookdown/figures/main-functions-agro-family-2.tex
inst/bookdown/figures/main-functions-agro-family-4-HALF.tex
inst/bookdown/figures/main-functions-agro-family-4-SR.tex
inst/bookdown/figures/main-functions-agro-family-5.tex
inst/bookdown/figures/main-functions-agro.tex
inst/bookdown/figures/main-functions-network.tex
inst/bookdown/figures/main-functions-organo.tex
inst/bookdown/figures/run_tex.R
inst/bookdown/figures/secondary-functions.tex
inst/bookdown/figures/tikz-head.tex
inst/bookdown/figures/warning.png
inst/bookdown/figures/wheat.JPG
inst/bookdown/index.Rmd
inst/bookdown/preamble.tex
inst/bookdown/style.css
inst/bookdown/toc.css
inst/return_report_web_site/.gitignore
inst/return_report_web_site/_example_1_template.Rmd
inst/return_report_web_site/_site.yml
inst/return_report_web_site/example_1.Rmd inst/return_report_web_site/index.Rmd inst/shiny_interfaces/agro/server.R inst/shiny_interfaces/agro/ui.R man/GxE_build_interaction_matrix.Rd man/HA_to_LF.Rd man/LF_to_HA.Rd man/PPBstats.Rd man/PPBstats_interface.Rd man/add_pies.Rd man/add_split_col.Rd man/biplot_data.Rd man/biplot_data.check_model_GxE.Rd man/biplot_data.check_model_hedonic.Rd man/biplot_data.check_model_napping.Rd man/check_analysis_argument.Rd man/check_convergence.Rd man/check_data_vec_variables.Rd man/check_freq_anova.Rd man/check_list_out_check_model.Rd man/check_model.Rd man/check_model.fit_model_GxE.Rd man/check_model.fit_model_anova.Rd man/check_model.fit_model_bh_GxE.Rd man/check_model.fit_model_bh_intra_location.Rd man/check_model.fit_model_bh_variance_intra.Rd man/check_model.fit_model_hedonic.Rd man/check_model.fit_model_home_away.Rd man/check_model.fit_model_local_foreign.Rd man/check_model.fit_model_napping.Rd man/check_model.fit_model_spatial.Rd man/common_functions.Rd man/comp.parameters.Rd man/cross_validation_model_bh_GxE.Rd man/data_agro_HA.Rd man/data_agro_LF.Rd man/data_agro_SR_4.Rd man/data_hedonic.Rd man/data_model_GxE.Rd man/data_model_bh_GxE.Rd man/data_model_bh_intra_location.Rd man/data_model_bh_variance_intra.Rd man/data_model_spatial.Rd man/data_napping.Rd man/data_network_bipart.Rd man/data_network_unipart_location.Rd man/data_network_unipart_sl.Rd man/design_experiment.Rd man/format_data_PPBstats.Rd man/format_data_PPBstats.data_agro.Rd man/format_data_PPBstats.data_agro_HA.Rd man/format_data_PPBstats.data_agro_LF.Rd man/format_data_PPBstats.data_agro_SR.Rd man/format_data_PPBstats.data_network.Rd man/format_data_PPBstats.data_organo_hedonic.Rd man/format_data_PPBstats.data_organo_napping.Rd man/format_organo.Rd man/get.at.least.X.groups.Rd man/get.caterpillar.plot.Rd man/get.env.info.Rd man/get.significant.groups.Rd man/get_biplot.Rd man/get_mcmc_traceplot_density.Rd man/get_mean_comparisons_and_Mpvalue.Rd man/get_perpendicular_segment.Rd man/ggplot_discrimitiveness_vs_representativeness.Rd man/ggplot_mean_vs_stability.Rd man/ggplot_which_won_where.Rd man/ggradar_bis.Rd man/is.inside.sector.Rd man/mean_comparisons.Rd man/mean_comparisons.check_model_GxE.Rd man/mean_comparisons.check_model_anova.Rd man/mean_comparisons.check_model_bh_GxE.Rd man/mean_comparisons.check_model_bh_intra_location.Rd man/mean_comparisons.check_model_bh_variance_intra.Rd man/mean_comparisons.check_model_hedonic.Rd man/mean_comparisons.check_model_home_away.Rd man/mean_comparisons.check_model_local_foreign.Rd man/mean_comparisons.check_model_spatial.Rd man/mean_comparisons.predict_the_past_model_bh_GxE.Rd man/mean_comparisons_freq_anova.Rd man/model_GxE.Rd man/model_anova.Rd man/model_bh_GxE.Rd man/model_bh_intra_location.Rd man/model_bh_variance_intra.Rd man/model_hedonic.Rd man/model_home_away.Rd man/model_local_foreign.Rd man/model_napping.Rd man/model_spatial.Rd man/mutlivariate.Rd man/parameter_groups.Rd man/parameter_groups_model_GxE.Rd man/parameter_groups_model_anova.Rd man/parameter_groups_model_bh_GxE.Rd man/parameter_groups_model_spatial.Rd man/plot.PPBstats.Rd man/plot.biplot_GxE.Rd man/plot.biplot_hedonic.Rd man/plot.biplot_napping.Rd man/plot.check_model_GxE.Rd man/plot.check_model_anova.Rd man/plot.check_model_bh_GxE.Rd man/plot.check_model_bh_intra_location.Rd man/plot.check_model_bh_variance_intra.Rd man/plot.check_model_hedonic.Rd man/plot.check_model_home_away.Rd man/plot.check_model_local_foreign.Rd man/plot.check_model_napping.Rd man/plot.check_model_spatial.Rd man/plot.cross_validation_model_bh_GxE.Rd man/plot.data_agro.Rd man/plot.data_agro_HA.Rd man/plot.data_agro_LF.Rd man/plot.data_agro_SR.Rd man/plot.data_network.Rd man/plot.data_organo_hedonic.Rd man/plot.data_organo_napping.Rd man/plot.mean_comparisons_model_GxE.Rd man/plot.mean_comparisons_model_anova.Rd man/plot.mean_comparisons_model_bh_GxE.Rd man/plot.mean_comparisons_model_bh_intra_location.Rd man/plot.mean_comparisons_model_hedonic.Rd man/plot.mean_comparisons_model_home_away.Rd man/plot.mean_comparisons_model_local_foreign.Rd man/plot.mean_comparisons_model_spatial.Rd man/plot.mean_comparisons_predict_the_past_model_bh_GxE.Rd man/plot.parameter_groups.Rd man/plot_check_freq_anova.Rd man/plot_descriptive_data.Rd man/plot_mean_comparisons_freq_anova.Rd man/pmap.Rd man/post_hoc_variation.Rd man/post_hoc_variation_model_GxE.Rd man/post_hoc_variation_model_anova.Rd man/post_hoc_variation_model_home_away.Rd man/post_hoc_variation_model_local_foreign.Rd man/post_hoc_variation_model_spatial.Rd man/predict_the_past_model_bh_GxE.Rd man/reshape_data_split_x_axis_in_col.Rd man/split_data_for_ggplot.Rd vignettes/1.install.Rmd vignettes/2.book.Rmd vignettes/3.thanks.Rmd
vignettes/figures/Logo-Covalience.png
vignettes/figures/Logo-Diversifood.jpg
vignettes/figures/Logo-EU.jpg
vignettes/figures/Logo-FdF.jpg
vignettes/figures/Logo-INRA.jpg
vignettes/figures/Logo-RSP.png
vignettes/figures/Logo-SOLIBAM.jpg
vignettes/figures/cc-by-nc-sa.png
vignettes/figures/gpl3.png
vignettes/figures/secondary-functions.png
vignettes/figures/warning.png
vignettes/figures/wheat.JPG
priviere/PPBstats documentation built on May 6, 2021, 1:20 a.m.

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