SequenceSummaryBarcodeHistogram: present a histogram of read count by sorted barcode Id
In sagrudd/nanopoRe: Accessory Methods for the Analysis of Oxford Nanopore Technologies DNA Sequence Data
Description
Usage
Arguments
Value
Examples
View source: R/SequencingSummaryBarcodes.R
Description
present a ggplot2 histogram of read counts by sorted barcode Id
Usage
1
SequenceSummaryBarcodeHistogram(seqsum = NA, bcthreshold = 150)
Arguments
seqsum
is the data.frame object as prepared by importSequencingSummary
bcthreshold
the threshold number of reads for a barcode to be
considered (150)
Value
a ggplot2 histogram or NULL
Examples
1
2
3
4
5
6
7
seqsumFile <- system.file('extdata', 'sequencing_summary.txt.bz2',
package = 'nanopoRe')
importSequencingSummary(seqsumFile)
barcodeFile <- system.file('extdata', 'barcoding_summary.txt.bz2',
package = 'nanopoRe')
SequencingSummaryBarcodeMerge(barcodeFile=barcodeFile)
SequenceSummaryBarcodeHistogram()
sagrudd/nanopoRe documentation built on June 7, 2020, 10:20 p.m.
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Description Usage Arguments Value Examples
View source: R/SequencingSummaryBarcodes.R
Description
present a ggplot2 histogram of read counts by sorted barcode Id
Usage
1 | SequenceSummaryBarcodeHistogram(seqsum = NA, bcthreshold = 150)
|
Arguments
seqsum |
is the data.frame object as prepared by importSequencingSummary |
bcthreshold |
the threshold number of reads for a barcode to be considered (150) |
Value
a ggplot2 histogram or NULL
Examples
1 2 3 4 5 6 7 | seqsumFile <- system.file('extdata', 'sequencing_summary.txt.bz2',
package = 'nanopoRe')
importSequencingSummary(seqsumFile)
barcodeFile <- system.file('extdata', 'barcoding_summary.txt.bz2',
package = 'nanopoRe')
SequencingSummaryBarcodeMerge(barcodeFile=barcodeFile)
SequenceSummaryBarcodeHistogram()
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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