SequenceSummaryBarcodeHistogram: present a histogram of read count by sorted barcode Id

Description Usage Arguments Value Examples

View source: R/SequencingSummaryBarcodes.R

Description

present a ggplot2 histogram of read counts by sorted barcode Id

Usage

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SequenceSummaryBarcodeHistogram(seqsum = NA, bcthreshold = 150)

Arguments

seqsum

is the data.frame object as prepared by importSequencingSummary

bcthreshold

the threshold number of reads for a barcode to be considered (150)

Value

a ggplot2 histogram or NULL

Examples

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seqsumFile <- system.file('extdata', 'sequencing_summary.txt.bz2',
    package = 'nanopoRe')
importSequencingSummary(seqsumFile)
barcodeFile <- system.file('extdata', 'barcoding_summary.txt.bz2',
    package = 'nanopoRe')
SequencingSummaryBarcodeMerge(barcodeFile=barcodeFile)
SequenceSummaryBarcodeHistogram()

sagrudd/nanopoRe documentation built on June 7, 2020, 10:20 p.m.