plotDepthOfCoverageMegablock: plot a tiled panel of chromosomal depths-of-coverage
In sagrudd/nanopoRe: Accessory Methods for the Analysis of Oxford Nanopore Technologies DNA Sequence Data
Description
Usage
Arguments
Value
Examples
View source: R/PlotsDepthOfCoverage.R
Description
This method will display depths-of-coverage for the chromosomes contained in
the provided parsedBamFile
container
Usage
1
plotDepthOfCoverageMegablock(coverageData = NULL, colMax = 4, ...)
Arguments
coverageData
data.frame of coverage data
colMax
defines the number of columns
...
for downstream tuning
Value
ggplot2 image
Examples
1
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3
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9
demoBam <- system.file("extdata",
"Ecoli_zymo_R10_filt_subs.bam",
package = "nanopoRe")
referenceFasta <- system.file("extdata",
"Escherichia_coli_complete_genome.fasta",
package = "nanopoRe")
setReferenceGenome(referenceFasta)
bamSummarise(demoBam, blockSize=1000L)
plotDepthOfCoverageMegablock()
sagrudd/nanopoRe documentation built on June 7, 2020, 10:20 p.m.
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Description Usage Arguments Value Examples
View source: R/PlotsDepthOfCoverage.R
Description
This method will display depths-of-coverage for the chromosomes contained in the provided parsedBamFile container
Usage
1 | plotDepthOfCoverageMegablock(coverageData = NULL, colMax = 4, ...)
|
Arguments
coverageData |
data.frame of coverage data |
colMax |
defines the number of columns |
... |
for downstream tuning |
Value
ggplot2 image
Examples
1 2 3 4 5 6 7 8 9 | demoBam <- system.file("extdata",
"Ecoli_zymo_R10_filt_subs.bam",
package = "nanopoRe")
referenceFasta <- system.file("extdata",
"Escherichia_coli_complete_genome.fasta",
package = "nanopoRe")
setReferenceGenome(referenceFasta)
bamSummarise(demoBam, blockSize=1000L)
plotDepthOfCoverageMegablock()
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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