API for thierrygosselin/radiator
RADseq Data Exploration, Manipulation and Visualization using R
| Global functions | |
|---|---|
| %$% | Man page |
| %<>% | Man page |
| %>% | Man page |
| allele_count | Man page |
| allele_frequencies | Man page Source code |
| assign_defaults | Man page Source code |
| bayescan_one | Man page |
| betas_estimator | Man page Source code |
| blacklist_hw | Man page |
| boxplot_stats | Man page |
| calibrate_alleles | Man page Source code |
| change_pop_names | Man page |
| check_args_class | Man page Source code |
| check_coverage | Man page |
| check_dart | Man page Source code |
| check_header_source_vcf | Man page |
| check_pop_levels | Man page |
| clean_dart_colnames | Man page |
| clean_dart_locus | Man page |
| clean_ind_names | Man page Source code |
| clean_markers_names | Man page Source code |
| clean_pop_names | Man page Source code |
| compute_maf | Man page |
| count_monomorphic | Man page Source code |
| dart2gds | Man page |
| data_info | Man page Source code |
| detect_all_missing | Man page Source code |
| detect_allele_problems | Man page Source code |
| detect_biallelic_markers | Man page Source code |
| detect_biallelic_problems | Man page Source code |
| detect_dart_format | Man page |
| detect_duplicate_genomes | Man page Source code |
| detect_genomic_format | Man page Source code |
| detect_gt | Man page |
| detect_het_outliers | Man page Source code |
| detect_microsatellites | Man page Source code |
| detect_mixed_genomes | Man page Source code |
| detect_paralogs | Man page Source code |
| detect_ref_genome | Man page Source code |
| diagnostic_ma | Man page Source code |
| distance2tibble | Man page Source code |
| distance_individuals | Man page |
| erase_genotypes | Man page Source code |
| estimate_m | Man page |
| extract_coverage | Man page |
| extract_dart_target_id | Man page Source code |
| extract_data_source | Man page |
| extract_dots | Man page Source code |
| extract_genotypes_metadata | Man page |
| extract_individuals_metadata | Man page |
| extract_individuals_vcf | Man page |
| extract_info_vcf | Man page |
| extract_markers_metadata | Man page |
| filter_blacklist_genotypes | Man page Source code |
| filter_common_markers | Man page Source code |
| filter_coverage | Man page Source code |
| filter_dart_reproducibility | Man page Source code |
| filter_fis | Man page Source code |
| filter_genotyping | Man page Source code |
| filter_het | Man page Source code |
| filter_hwe | Man page Source code |
| filter_individuals | Man page Source code |
| filter_ld | Man page Source code |
| filter_ma | Man page Source code |
| filter_monomorphic | Man page Source code |
| filter_rad | Man page Source code |
| filter_snp_number | Man page Source code |
| filter_snp_position_read | Man page Source code |
| filter_whitelist | Man page Source code |
| folder_prefix | Man page |
| folder_short | Man page |
| gds2tidy | Man page |
| generate_filename | Man page |
| generate_folder | Man page |
| generate_geno_freq_boundaries | Man page |
| generate_gt_vcf_nuc | Man page |
| generate_hzar | Man page |
| generate_markers_metadata | Man page |
| generate_squeleton_folders | Man page Source code |
| generate_stats | Man page |
| generate_strata | Man page |
| generate_whitelist | Man page Source code |
| genome_similarity | Man page |
| genomic_converter | Man page Source code |
| gt2array | Man page Source code |
| gt_recoding | Man page |
| haplotype_reconstruction | Man page Source code |
| hwe_analysis | Man page |
| ibdg_fh | Man page Source code |
| import_dart | Man page |
| ind_total_reads | Man page Source code |
| individual_het | Man page |
| individuals2strata | Man page |
| join_rad | Man page |
| join_strata | Man page |
| ld2df | Man page |
| ld_boxplot | Man page |
| ld_missing | Man page |
| ld_pruning | Man page |
| list_filters | Man page |
| ma_one | Man page |
| markers_fis | Man page |
| markers_genotyped_helper | Man page Source code |
| markers_het | Man page |
| merge_dart | Man page |
| message_func_call | Man page Source code |
| minor_allele_stats | Man page |
| missing_per_pop | Man page |
| n | Man page |
| not_common_markers | Man page Source code |
| parallel_core_opt | Man page |
| parse_gds_metadata | Man page |
| pi | Man page |
| pi_pop | Man page |
| pi_rad | Man page |
| plot_bayescan | Man page |
| plot_boxplot_coverage | Man page |
| plot_boxplot_diversity | Man page |
| plot_coverage_imbalance_diagnostic | Man page |
| plot_density_distribution_coverage | Man page |
| plot_density_distribution_het | Man page |
| plot_density_distribution_maf | Man page |
| plot_distribution_diversity | Man page |
| plot_het_outliers | Man page |
| plot_histogram | Man page |
| plot_snp_number_loci | Man page |
| plot_snp_position_read | Man page |
| plot_upset | Man page |
| private_alleles | Man page Source code |
| private_haplotypes | Man page Source code |
| rad_long | Man page |
| rad_wide | Man page |
| radiator_common_arguments | Man page Source code |
| radiator_dots | Man page Source code |
| radiator_folder | Man page Source code |
| radiator_function_header | Man page |
| radiator_future | Man page |
| radiator_gds | Man page Source code |
| radiator_gds_skeleton | Man page |
| radiator_helper_plot | Man page |
| radiator_packages_dep | Man page |
| radiator_parameters | Man page Source code |
| radiator_pkg_install | Man page Source code |
| radiator_question | Man page Source code |
| radiator_results_message | Man page Source code |
| radiator_snakecase | Man page |
| radiator_split_tibble | Man page |
| radiator_tic | Man page |
| radiator_toc | Man page |
| read_blacklist_genotypes | Man page Source code |
| read_blacklist_id | Man page |
| read_dart | Man page |
| read_plink | Man page Source code |
| read_rad | Man page Source code |
| read_strata | Man page Source code |
| read_vcf | Man page Source code |
| read_whitelist | Man page Source code |
| remove_duplicates | Man page |
| replace_by_na | Man page Source code |
| reset_filters | Man page |
| run_bayescan | Man page Source code |
| separate_gt | Man page |
| separate_markers | Man page |
| sex_markers_plot | Man page |
| sexy_markers | Man page Source code |
| simulate_genos_from_posterior | Man page |
| split_tibble_rows | Man page |
| split_vcf | Man page |
| split_vec | Man page |
| strata_haplo | Man page |
| strip_rad | Man page |
| subsampling_data | Man page |
| summarise_genotypes | Man page Source code |
| summarize_sex | Man page |
| summary_gds | Man page |
| summary_rad | Man page Source code |
| summary_strata | Man page Source code |
| switch_allele_count | Man page |
| switch_genotypes | Man page |
| sync_gds | Man page |
| tibble_stats | Man page |
| tidy2gds | Man page Source code |
| tidy2wide | Man page |
| tidy_dart_metadata | Man page |
| tidy_fstat | Man page Source code |
| tidy_genepop | Man page Source code |
| tidy_genind | Man page Source code |
| tidy_genlight | Man page Source code |
| tidy_genomic_data | Man page |
| tidy_gtypes | Man page Source code |
| tidy_plink | Man page |
| tidy_vcf | Man page |
| tidy_wide | Man page Source code |
| update_bl_individuals | Man page |
| update_bl_markers | Man page |
| update_filter_parameter | Man page |
| update_radiator_gds | Man page |
| vcf_strata | Man page |
| write_arlequin | Man page Source code |
| write_bayescan | Man page |
| write_betadiv | Man page Source code |
| write_colony | Man page Source code |
| write_dadi | Man page Source code |
| write_fasta | Man page |
| write_faststructure | Man page Source code |
| write_fineradstructure | Man page Source code |
| write_gds | Man page |
| write_genepop | Man page |
| write_genepopedit | Man page Source code |
| write_genind | Man page |
| write_genlight | Man page |
| write_gsi_sim | Man page Source code |
| write_gtypes | Man page Source code |
| write_hapmap | Man page Source code |
| write_hierfstat | Man page |
| write_hzar | Man page Source code |
| write_ldna | Man page Source code |
| write_maverick | Man page Source code |
| write_pcadapt | Man page Source code |
| write_plink | Man page |
| write_rad | Man page |
| write_related | Man page Source code |
| write_rubias | Man page Source code |
| write_snprelate | Man page Source code |
| write_stockr | Man page Source code |
| write_structure | Man page Source code |
| write_vcf | Man page |
