Files in zslastman/RiboStan

Estimates Isoform Specific RPF Footprint Densities

LICENSE.md R/anno.R R/data.R R/get_offsets.R R/get_ritpms.R R/kl_div.R R/model_TE.R R/periodicity_tests.R R/utils-pipe.R data-raw/create_testdata.R data-raw/testing.R man/add_cor_offset.Rd man/addphase.Rd man/chr22_anno.Rd man/convert_gtf.Rd man/export_codon_dts.Rd man/fmcols.Rd man/ftest_orfs.Rd man/ftestvect.Rd man/gene_level_elong.Rd man/gene_level_expr.Rd man/get_cds_codons.Rd man/get_cds_reads.Rd man/get_cdsgrl.Rd man/get_codon_occs.Rd man/get_codposdf.Rd man/get_cov_rust_scores.Rd man/get_exprfile.Rd man/get_incl_max_offsets.Rd man/get_kl_df.Rd man/get_metacodon_profs.Rd man/get_offsets.Rd man/get_orf_elong.Rd man/get_psite_gr.Rd man/get_psitecov.Rd man/get_read_spmat.Rd man/get_readgr.Rd man/get_readlens.Rd man/get_ribofasta_anno.Rd man/get_ritpms.Rd man/get_sitedf.Rd man/get_trspace_cds.Rd man/hasMstart.Rd man/is_out_of_bounds.Rd man/load_annotation.Rd man/make_ext_fasta.Rd man/mergeseqlevels.Rd man/metacodondf.Rd man/most_freq.Rd man/offsets_df.Rd man/optimize_ritpms.Rd man/order_grl_st.Rd man/periodicity_filter_uORFs.Rd man/pipe.Rd man/plot_kl_dv.Rd man/read_ribobam.Rd man/resize_grl.Rd man/resize_grl_endfix.Rd man/resize_grl_startfix.Rd man/rpfs.Rd man/sample_cols_spmat.Rd man/sample_cov_gr.Rd man/select_offsets.Rd man/sort_grl_st.Rd man/spl_mapFromTranscripts.Rd man/subset_annotation.Rd man/width1grs.Rd tests/testthat.R tests/testthat/test-annotation.R tests/testthat/test-bamread.R tests/testthat/test-get_codon_occs.R tests/testthat/test-kl_div.R tests/testthat/test-multitaper.R tests/testthat/test-offsets_work.R tests/testthat/test-psites.R tests/testthat/test-quant.R vignettes/Ribostan.rmd