Files in lumi

BeadArray Specific Methods for Illumina Methylation and Expression Microarrays

R/produceMethylationGEOSubmissionFile.R R/seq2id.R R/inverseVST.R R/getNuIDMappingInfo.R R/monoSmu.R R/getControlProbe.R R/lumiT.R R/detectOutlier.R R/lumiN.R R/nuID2IlluminaID.R R/detectionCall.R R/lumiExpresso.R R/lumiB.R R/plotHousekeepingGene.R R/plotStringencyGene.R R/AllGenerics.R R/is.nuID.R R/addControlData2lumi.R R/id2seq.R R/plotSampleRelation.R R/nuIDMapping.R R/lumiR.batch.R R/IlluminaID2nuID.R R/plotControlData.R R/rsn.R R/lumiR.R R/estimateLumiCV.R R/produceGEOSubmissionFile.R R/methylation_preprocessing.R R/bgAdjust.R R/zzz.R R/plotVST.R R/ssn.R R/LumiBatch-class.R R/plotCDF.R R/produceGEOPlatformFile.R R/getChipInfo.R R/getControlData.R R/lumiQ.R R/nuID2RefSeqID.R R/nuID2EntrezID.R R/vst.R R/monoSpline.R R/addNuID2lumi.R R/getControlType.R R/produceGEOSampleInfoTemplate.R R/rankinvariant.R vignettes/lumi_VST_evaluation.R vignettes/IlluminaAnnotation.R vignettes/lumi_VST_evaluation.pdf vignettes/methylationAnalysis.R vignettes/methylationAnalysis.pdf vignettes/IlluminaAnnotation.pdf vignettes/lumi.R vignettes/lumi.pdf man/addNuID2lumi.Rd man/IlluminaID2nuID.Rd man/getControlType.Rd man/nuID2IlluminaID.Rd man/addAnnotationInfo.Rd man/lumiT.Rd man/plotVST.Rd man/monoSmu.Rd man/plotSampleRelation.Rd man/produceMethylationGEOSubmissionFile.Rd man/boxplot-methods.Rd man/probeID2nuID.Rd man/m2beta.Rd man/lumiMethyStatus.Rd man/asBigMatrix-methods.Rd man/normalizeMethylation.ssn.Rd man/LumiBatch-class.Rd man/MAplot-methods.Rd man/vst.Rd man/nuID2probeID.Rd man/lumi.package.Rd man/nuID2targetID.Rd man/estimateBeta.Rd man/addControlData2lumi.Rd man/colorBiasSummary.Rd man/getControlProbe.Rd man/getNuIDMappingInfo.Rd man/plotColorBias2D.Rd man/ssn.Rd man/nuID2RefSeqID.Rd man/plotColorBias1D.Rd man/targetID2nuID.Rd man/adjColorBias.quantile.Rd man/lumiQ.Rd man/produceGEOPlatformFile.Rd man/lumiN.Rd man/plotGammaFit.Rd man/monoSpline.Rd man/seq2id.Rd man/plotControlData.Rd man/getControlData.Rd man/beta2m.Rd man/detectOutlier.Rd man/getChipInfo.Rd man/lumiR.Rd man/adjColorBias.ssn.Rd man/boxplot-MethyLumiM-methods.Rd man/lumiExpresso.Rd man/normalizeMethylation.quantile.Rd man/lumiR.batch.Rd man/produceGEOSubmissionFile.Rd man/methylationCall.Rd man/density-methods.Rd man/estimateLumiCV.Rd man/bgAdjustMethylation.Rd man/getChrInfo.Rd man/addControlData2methyLumiM.Rd man/bgAdjust.Rd man/pairs-methods.Rd man/smoothQuantileNormalization.Rd man/inverseVST.Rd man/lumiMethyN.Rd man/example.lumiMethy.Rd man/hist-methods.Rd man/lumiMethyC.Rd man/importMethyIDAT.Rd man/lumiB.Rd man/id2seq.Rd man/detectionCall.Rd man/produceGEOSampleInfoTemplate.Rd man/plotHousekeepingGene.Rd man/lumiMethyB.Rd man/plot-methods.Rd man/nuID2EntrezID.Rd man/gammaFitEM.Rd man/estimateM.Rd man/lumiMethyR.Rd man/rankinvariant.Rd man/example.lumi.Rd man/is.nuID.Rd man/estimateIntensity.Rd man/rsn.Rd man/boxplotColorBias.Rd man/plotCDF.Rd man/plotDensity.Rd man/example.methyTitration.Rd man/plotStringencyGene.Rd man/estimateMethylationBG.Rd