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The package provides a set of R functions for interacting with BioPAX OWL files using Paxtools and the querying Pathway Commons (PC) molecular interaction database that are hosted by the Computational Biology Center at Memorial Sloan-Kettering Cancer Center (MSKCC). Pathway Commons databases include: BIND, BioGRID, CORUM, CTD, DIP, DrugBank, HPRD, HumanCyc, IntAct, KEGG, MirTarBase, Panther, PhosphoSitePlus, Reactome, RECON, TRANSFAC.
Package details |
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Author | Augustin Luna |
Bioconductor views | GeneSetEnrichment GraphAndNetwork KEGG Network NetworkEnrichment Pathways Reactome Software SystemsBiology |
Maintainer | Augustin Luna <lunaa@cbio.mskcc.org> |
License | LGPL-3 |
Version | 1.24.0 |
URL | https://github.com/BioPAX/paxtoolsr |
Package repository | View on Bioconductor |
Installation |
Install the latest version of this package by entering the following in R:
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