dyeBiasCorr: Correct dye bias in by linear scaling.
In sesame: Tools For Analyzing Illumina Infinium DNA Methylation Arrays
Description
Usage
Arguments
Value
Examples
Description
The function takes a SigSet as input and scale both the Grn and Red
signal to a reference (ref) level. If the reference level is not given, it
is set to the mean intensity of all the in-band signals. The function
returns a SigSet with dye bias corrected.
Usage
1
dyeBiasCorr(sset, ref = NULL)
Arguments
sset
a SigSet
ref
reference signal level
Value
a normalized SigSet
Examples
1
2
sset <- sesameDataGet('EPIC.1.LNCaP')$sset
sset.db <- dyeBiasCorr(sset)
sesame documentation built on Nov. 15, 2020, 2:08 a.m.
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Description Usage Arguments Value Examples
Description
The function takes a SigSet as input and scale both the Grn and Red
signal to a reference (ref) level. If the reference level is not given, it
is set to the mean intensity of all the in-band signals. The function
returns a SigSet with dye bias corrected.
Usage
1 | dyeBiasCorr(sset, ref = NULL)
|
Arguments
sset |
a |
ref |
reference signal level |
Value
a normalized SigSet
Examples
1 2 | sset <- sesameDataGet('EPIC.1.LNCaP')$sset
sset.db <- dyeBiasCorr(sset)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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