inferEthnicity: Infer Ethnicity
In sesame: Tools For Analyzing Illumina Infinium DNA Methylation Arrays
Description
Usage
Arguments
Details
Value
Examples
Description
This function uses both the built-in rsprobes as well as the type I
Color-Channel-Switching probes to infer ethnicity.
Usage
1
inferEthnicity(sset)
Arguments
sset
a SigSet
Details
sset better be background subtracted and dyebias corrected for
best accuracy
Please note: the betas should come from sigset *without*
channel inference.
Value
string of ethnicity
Examples
1
2
sset <- makeExampleSeSAMeDataSet("HM450")
inferEthnicity(sset)
sesame documentation built on Nov. 15, 2020, 2:08 a.m.
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Description Usage Arguments Details Value Examples
Description
This function uses both the built-in rsprobes as well as the type I Color-Channel-Switching probes to infer ethnicity.
Usage
1 | inferEthnicity(sset)
|
Arguments
sset |
a |
Details
sset better be background subtracted and dyebias corrected for best accuracy
Please note: the betas should come from sigset *without* channel inference.
Value
string of ethnicity
Examples
1 2 | sset <- makeExampleSeSAMeDataSet("HM450")
inferEthnicity(sset)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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