Description Usage Arguments Details Value Examples
The function takes a
SigSet as input, computes detection p-value
using negative control probes parametrized in a normal distribution a la
Genome Studio and returns a new
SigSet with an updated pval slot.
detectionPnegNormGS(sset, force = FALSE)
force rerun even if result already exists
P-value is calculated using negative control probes as the estimate of background where Grn channel and Red channel are merged. But when estimating p-value the Red and Grn are summed (non-ideal).
sset <- makeExampleSeSAMeDataSet() sset <- detectionPnegNormGS(sset)
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