getSegment: Select segment from coefficient table

In sesame: Tools For Analyzing Illumina Infinium DNA Methylation Arrays

Description

This function takes a coefficient table and returns a subset of the table targeting only the specified segment using segment ID.

Usage

getSegment(cf1, seg.id)

Arguments

cf1	coefficient table of one factor from DMR
seg.id	segment ID

Value

coefficient table from given segment

Examples

data <- sesameDataGet('HM450.76.TCGA.matched')
cf <- DMR(data$betas, data$sampleInfo, ~type)
getSegment(cf[[1]], cf[[1]][['Seg.ID']][1])

sesame documentation built on Nov. 15, 2020, 2:08 a.m.