inferSexKaryotypes: Infer Sex Karyotype
In sesame: Tools For Analyzing Illumina Infinium DNA Methylation Arrays
Description
Usage
Arguments
Value
Examples
Description
The function takes a SigSet and infers the sex chromosome Karyotype
and presence/absence of X-chromosome inactivation (XCI). chrX, chrY and XCI
are inferred relatively independently. This function gives a more detailed
look of potential sex chromosome aberrations.
Usage
1
inferSexKaryotypes(sset)
Arguments
sset
a SigSet
Value
Karyotype string, with XCI
Examples
1
2
sset <- sesameDataGet('EPIC.1.LNCaP')$sset
inferSexKaryotypes(sset)
sesame documentation built on Nov. 15, 2020, 2:08 a.m.
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Description Usage Arguments Value Examples
Description
The function takes a SigSet and infers the sex chromosome Karyotype
and presence/absence of X-chromosome inactivation (XCI). chrX, chrY and XCI
are inferred relatively independently. This function gives a more detailed
look of potential sex chromosome aberrations.
Usage
1 | inferSexKaryotypes(sset)
|
Arguments
sset |
a |
Value
Karyotype string, with XCI
Examples
1 2 | sset <- sesameDataGet('EPIC.1.LNCaP')$sset
inferSexKaryotypes(sset)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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