inferTypeIChannel: Infer and reset color channel for Type-I probes instead of...
In sesame: Tools For Analyzing Illumina Infinium DNA Methylation Arrays
Description
Usage
Arguments
Value
Examples
View source: R/channel_inference.R
Description
IGG => Type-I green that is inferred to be green
IRR => Type-I red that is inferred to be red
Usage
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inferTypeIChannel(
sset,
switch_failed = FALSE,
verbose = FALSE,
summary = FALSE
)
Arguments
sset
a SigSet
switch_failed
whether to switch failed probes (default to FALSE)
verbose
whether to print correction summary
summary
return summarized numbers only.
Value
a SigSet, or numerics if summary == TRUE
Examples
1
2
sset <- sesameDataGet('EPIC.1.LNCaP')$sset
inferTypeIChannel(sset)
sesame documentation built on Nov. 15, 2020, 2:08 a.m.
R Package Documentation
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Description Usage Arguments Value Examples
View source: R/channel_inference.R
Description
IGG => Type-I green that is inferred to be green IRR => Type-I red that is inferred to be red
Usage
1 2 3 4 5 6 | inferTypeIChannel(
sset,
switch_failed = FALSE,
verbose = FALSE,
summary = FALSE
)
|
Arguments
sset |
a |
switch_failed |
whether to switch failed probes (default to FALSE) |
verbose |
whether to print correction summary |
summary |
return summarized numbers only. |
Value
a SigSet, or numerics if summary == TRUE
Examples
1 2 | sset <- sesameDataGet('EPIC.1.LNCaP')$sset
inferTypeIChannel(sset)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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