getProbesByRegion: Get probes by genomic region

In sesame: Tools For Analyzing Illumina Infinium DNA Methylation Arrays

Description

The function takes a genomic coordinate and output the a vector of probes on the specified platform that falls in the given genomic region.

Usage

getProbesByRegion(
  chrm,
  beg = 1,
  end = -1,
  platform = c("EPIC", "HM450"),
  refversion = c("hg38", "hg19")
)

Arguments

chrm	chromosome
beg	begin, 1 if omitted
end	end, chromosome end if omitted
platform	EPIC or HM450
refversion	hg38 or hg19

Value

probes that fall into the given region

Examples

getProbesByRegion('chr5', 135413937, 135419936,
    refversion = 'hg19', platform = 'HM450')

sesame documentation built on Nov. 15, 2020, 2:08 a.m.