getBetas: Get beta Values
In sesame: Tools For Analyzing Illumina Infinium DNA Methylation Arrays
Description
Usage
Arguments
Value
Examples
Description
sum.typeI is used for rescuing beta values on
Color-Channel-Switching CCS probes. The function takes a SigSet
and returns beta value except that Type-I in-band signal and out-of-band
signal are combined. This prevents color-channel switching due to SNPs.
Usage
1
Arguments
sset
SigSet
mask
whether to use mask
sum.TypeI
whether to sum type I channels
Value
a numeric vector, beta values
Examples
1
2
sset <- sesameDataGet('EPIC.1.LNCaP')$sset
betas <- getBetas(sset)
sesame documentation built on Nov. 15, 2020, 2:08 a.m.
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Description Usage Arguments Value Examples
Description
sum.typeI is used for rescuing beta values on
Color-Channel-Switching CCS probes. The function takes a SigSet
and returns beta value except that Type-I in-band signal and out-of-band
signal are combined. This prevents color-channel switching due to SNPs.
Usage
1 |
Arguments
sset |
|
mask |
whether to use mask |
sum.TypeI |
whether to sum type I channels |
Value
a numeric vector, beta values
Examples
1 2 | sset <- sesameDataGet('EPIC.1.LNCaP')$sset
betas <- getBetas(sset)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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