getBetas: Get beta Values

Description Usage Arguments Value Examples

View source: R/sesame.R

Description

sum.typeI is used for rescuing beta values on Color-Channel-Switching CCS probes. The function takes a SigSet and returns beta value except that Type-I in-band signal and out-of-band signal are combined. This prevents color-channel switching due to SNPs.

Usage

1
getBetas(sset, mask = TRUE, sum.TypeI = FALSE)

Arguments

sset

SigSet

mask

whether to use mask

sum.TypeI

whether to sum type I channels

Value

a numeric vector, beta values

Examples

1
2
sset <- sesameDataGet('EPIC.1.LNCaP')$sset
betas <- getBetas(sset)

sesame documentation built on Nov. 15, 2020, 2:08 a.m.