getAFTypeIbySumAlleles: Get allele frequency treating type I by summing alleles
In sesame: Tools For Analyzing Illumina Infinium DNA Methylation Arrays
Description
Usage
Arguments
Value
Examples
Description
Takes a SigSet as input and returns a numeric vector containing
extra allele frequencies based on Color-Channel-Switching (CCS) probes.
If no CCS probes exist in the SigSet, then an numeric(0) is
returned.
Usage
1
getAFTypeIbySumAlleles(sset, known.ccs.only = TRUE)
Arguments
sset
SigSet
known.ccs.only
consider only known CCS probes
Value
beta values
Examples
1
2
sset <- sesameDataGet('EPIC.1.LNCaP')$sset
betas <- getAFTypeIbySumAlleles(sset)
sesame documentation built on Nov. 15, 2020, 2:08 a.m.
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Description Usage Arguments Value Examples
Description
Takes a SigSet as input and returns a numeric vector containing
extra allele frequencies based on Color-Channel-Switching (CCS) probes.
If no CCS probes exist in the SigSet, then an numeric(0) is
returned.
Usage
1 | getAFTypeIbySumAlleles(sset, known.ccs.only = TRUE)
|
Arguments
sset |
|
known.ccs.only |
consider only known CCS probes |
Value
beta values
Examples
1 2 | sset <- sesameDataGet('EPIC.1.LNCaP')$sset
betas <- getAFTypeIbySumAlleles(sset)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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