detectionPoobEcdf: Detection P-value based on ECDF of out-of-band signal
In sesame: Tools For Analyzing Illumina Infinium DNA Methylation Arrays
Description
Usage
Arguments
Details
Value
Examples
Description
aka pOOBAH (p-vals by Out-Of-Band Array Hybridization)
Usage
1
2
3
Arguments
sset
a SigSet
force
force rerun even if result already exists
Details
The function takes a SigSet as input, computes detection p-value
using out-of-band probes empirical distribution and returns a new
SigSet with an updated pval slot.
Value
detection p-value
Examples
1
2
3
4
5
sset <- makeExampleSeSAMeDataSet()
sset <- detectionPoobEcdf(sset)
sset <- makeExampleSeSAMeDataSet()
sset <- pOOBAH(sset)
sesame documentation built on Nov. 15, 2020, 2:08 a.m.
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Description Usage Arguments Details Value Examples
Description
aka pOOBAH (p-vals by Out-Of-Band Array Hybridization)
Usage
1 2 3 |
Arguments
sset |
a |
force |
force rerun even if result already exists |
Details
The function takes a SigSet as input, computes detection p-value
using out-of-band probes empirical distribution and returns a new
SigSet with an updated pval slot.
Value
detection p-value
Examples
1 2 3 4 5 | sset <- makeExampleSeSAMeDataSet()
sset <- detectionPoobEcdf(sset)
sset <- makeExampleSeSAMeDataSet()
sset <- pOOBAH(sset)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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