bisConversionControl: Compute internal bisulfite conversion control
In sesame: Tools For Analyzing Illumina Infinium DNA Methylation Arrays
Description
Usage
Arguments
Value
Examples
Description
Compute GCT score for internal bisulfite conversion control. The function
takes a SigSet as input. The higher the GCT score, the more likely
the incomplete conversion.
Usage
1
bisConversionControl(sset, use.median = FALSE)
Arguments
sset
signal set
use.median
use median to compute GCT instead of mean
Value
GCT score (the higher, the more incomplete conversion)
Examples
1
2
sset <- makeExampleSeSAMeDataSet('HM450')
bisConversionControl(sset)
sesame documentation built on Nov. 15, 2020, 2:08 a.m.
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Description Usage Arguments Value Examples
Description
Compute GCT score for internal bisulfite conversion control. The function
takes a SigSet as input. The higher the GCT score, the more likely
the incomplete conversion.
Usage
1 | bisConversionControl(sset, use.median = FALSE)
|
Arguments
sset |
signal set |
use.median |
use median to compute GCT instead of mean |
Value
GCT score (the higher, the more incomplete conversion)
Examples
1 2 | sset <- makeExampleSeSAMeDataSet('HM450')
bisConversionControl(sset)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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