Biocview "ExperimentalDesign"

Ancestry Specific Allele Frequency Estimation

A wrapper for Gemma's Restful API to access curated gene expression data and differential expression analyses

Base NanoString Experiment Class

Binomial Random Forest Feature Selection

Compare Characteristic Features of Count Data Sets

Confounding Explorer

Creating a DelayedMatrix of Regression Residuals

Cytometry dATa anALYSis Tools

Experimental Design in Differential Abundance analysis

Exposome exploration and outcome data analysis

Genetic Algorithm Optimization

Graphical Exploration of Design Matrices

Infrastructure for Mass Spectrometry Experiments

L1-regularization based methods for detection of differential splicing

MBDDiff for processing MBDcap-seq datasets

Mean Alterations Using Discrete Expression

Multi-Omics Simulation (MOSim)

NanoString GeoMx Tools

Omixer: multivariate and reproducible sample randomization to proactively counter batch effects in omics studies

OSAT: Optimal Sample Assignment Tool

Plots and annotation for choosing BrainFlow target probe sequence

Randomize Samples for -omics Profiling

Retrieves Condition-Specific Variants in RNA-Seq Data

RNASeqR: an R package for automated two-group RNA-Seq analysis workflow

RnaSeqSampleSize

Robust statistical inference for quantitative LC-MS proteomics

Sample Size Calculation for RNA-Seq Experimental Design

Scalable Analysis of Differential Transcript Usage for Bulk and Single-Cell RNA-sequencing Applications

Simulation tool for optimal design of high-dimensional MS-based proteomics experiment

spsBio: A systemPipeShiny plugin for biological data visualization

Statistical Analysis of MPRA data

Suite of Functions for Pooled Crispr Screen QC and Analysis

SynMut: Designing Synonymously Mutated Sequences with Different Genomic Signatures

systemPipeShiny: An Interactive Framework for Workflow Management and Visualization

Test for differential expression for RNA-seq data

Tools for data visualization

Transform and Filter SWATH Data for Statistical Packages

Well Plate Maker