Biocview "FunctionalPrediction"

Basic peak calling on STARR-seq data

Candidate Gene Miner

circRNAprofiler: An R-Based Computational Framework for the Downstream Analysis of Circular RNAs

Classification of RNA Sequences using Complex Network and Information Theory

Clustering of Genomic Regions Analysis Method

Comprehensive Annotation of Predictive Features for Interval-based Genomic Data

Delineate outstanding genomic zones of differential gene activity

Extending guilt by association by degree

Fast calculation of uniConSig and CSEA

Find Potential Disease-Related Genes

Find Specificity Groups with GLIPH and GLIPH2 Method

flexible pipelines for secretome prediction

Functional analysis of metabolic and transcriptomic data

Functional Annotation of Custom Transcriptomes

Functions for the projection of weights from PCA, CoGAPS, NMF, correlation, and clustering

Gene regulator enrichment analysis

Genetic inteRaction and EssenTiality neTwork mApper

GWAS Analysis of Regulatory or Functional Information Enrichment with LD correction

Hi-C Annotation and Graphics Ensemble

Identification and classification of plant transcription factors

Identify, Annotate and Visualize Alternative Splicing and Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data.

Identify, Annotate and Visualize Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data

Inference of Genetic Variants Driving Cellular Phenotypes

Investigate iLINCS for candidate repurposable drugs

Mean Alterations Using Discrete Expression

Package to Draw Protein Schematics from Uniprot API output

Pathway RespOnsive GENes for activity inference from gene expression

Phenotype Consensus ANalysis (PCAN)

PhyloProfile

PhyloProfileCorona

PhyloProfileRibi

Predict MicroExons in Plant Genomes

Prioritization of potentially bioactive metabolic features from epidemiological and environmental metabolomics datasets

R Interface with InterMine-Powered Databases

RNASeqR: an R package for automated two-group RNA-Seq analysis workflow

R package for RIVER (RNA-Informed Variant Effect on Regulation)

R wrapper for the OMA REST API

Smooth modeling of bisulfite sequencing

Tools for spliced gene structure manipulation and analysis

Virtual Inference of Protein-activity by Enriched Regulon analysis