Biocview "Metagenomics"

Accurate, high-resolution sample inference from amplicon sequencing data
Accurate, high-resolution sample inference from amplicon sequencing data
A lecture on sequence count data
Analysis Of Differential Abundance Taking Sample and Scale Variation Into Account
Analysis Of Differential Abundance Taking Sample Variation Into Account
Analyze Microbiome Data
An interface package for the BIOM file format
An interface package for the BIOM file format
An interface package for the BIOM file format
A Statistical Model for Describing and Simulating Microbial Community Profiles
Bayesian ANalysis Of Compositional Covariance
Bayesian ANalysis Of Compositional Covariance
Bayesian ANalysis Of Compositional Covariance
Benchmark of differential abundance methods on microbiome data
Calculate, visualize and analyse overlap between genomic regions
ccrepe_and_nc.score
ccrepe_and_nc.score
Codon Usage Analysis and Prediction of Gene Expressivity
Codon Usage Analysis and Prediction of Gene Expressivity
Comparing Differential Abundance/Expression Methods
Competitive Balances for Taxonomic Enrichment Analysis in R
Competitive Balances for Taxonomic Enrichment Analysis in R
Compositional omics model based visual integration
Compositional omics model based visual integration
Compositional omics model based visual integration
Cut rDNA Sequences Into Domains Using Covariance Models
Data analysis toolkits in metagenomics
Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data
Easy Use R
Exploration of marker-gene sequence taxonomic annotations
Exploration of marker-gene sequence taxonomic annotations
FASTQ2OTU: Automate microbiome analyses
Feature-Wise Normalization for Microbiome Sequencing Data
Fit row-column association models with the negative binomial distribution for the microbiome
Fit row-column association models with the negative binomial distribution for the microbiome
Functions to help analyze data as phyloseq objects
Functions to help analyze data as phyloseq objects
Greengenes 13.8 85% similarity OTU threshold 16S rRNA Database Annotation Data
Greengenes 13.8 88% similarity OTU threshold 16S rRNA Database Annotation Data
Greengenes 13.8 91% similarity OTU threshold 16S rRNA Database Annotation Data
Greengenes 13.8 94% similarity OTU threshold 16S rRNA Database Annotation Data
Greengenes 13.8 97% similarity OTU threshold 16S rRNA Database Annotation Data
Handling and analysis of high-throughput microbiome census data
Handling and analysis of high-throughput microbiome census data
Identify Contaminants in Marker-gene and Metagenomics Sequencing Data
Identify Contaminants in Marker-gene and Metagenomics Sequencing Data
Interactive microbiome analysis toolkit
Interactive microbiome analysis toolkit
Interactive microbiome analysis toolkit
Interface to Call Programs from Infernal RNA Covariance Model Package
Maaslin
Maaslin2
Mapping of Phyloseq Information
Meta-analysis Methods with Uniform Pipeline for Heterogeneity in Microbiome Studies
Meta-analysis Methods with Uniform Pipeline for Heterogeneity in Microbiome Studies
Metabarcoding and microbiome analysis using multiple amplicons
Microbiome Analytics
Microbiome Analytics
microbiome biomarker analysis toolkit
Microbiome Exploration App
Microbiome Exploration App
Miscellaneous Functions for Metabarcoding Analysis
Miscellaneous Functions for Metabarcoding Analysis
Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolite Profiles
"Multivariable Association Discovery in Population-scale Meta-omics Studies"
"Multivariable Association Discovery in Population-scale Meta-omics Studies"
Omics Data Integration Project
Omics Data Integration Project
Omics Data Integration Project
PathoStat Statistical Microbiome Analysis Package
PathoStat Statistical Microbiome Analysis Package
Permutation filtration for microbiome data
Permutation filtration for microbiome data
Phylogenetic partitioning based ILR transform for metagenomics data
Phylogenetic partitioning based ILR transform for metagenomics data
Resampling Collapsed Null Distributions for Simultaneous Inference
Resampling Collapsed Null Distributions for Simultaneous Inference
Resampling Collapsed Null Distributions for Simultaneous Inference
Ribosomal Database Project 16S rRNA release 11.5 Annotation Data
R interface to EBI MGnify metagenomics resource
R Interface to the metaviz web app for interactive metagenomics data analysis and visualization
R Interface to the metaviz web app for interactive metagenomics data analysis and visualization
R-side access to published microbial signatures from BugSigDB
SILVA SSR rRNA release 128.1 Annotation Data
SILVA SSR rRNA release 128.1 Annotation Data
SILVA SSR rRNA release 128.1 Annotation Data
Sparse Data Observations for Simulating Synthetic Abundance
Sparse Data Observations for Simulating Synthetic Abundance
Statistical analysis for sparse high-throughput sequencing
Statistical analysis for sparse high-throughput sequencing
Statistical Inference of Associations between Microbial Communities And host phenoTypes
Statistical Inference of Associations between Microbial Communities And host phenoTypes
Statistical Inference of Associations between Microbial Communities And host phenoTypes
Time-Course Multi-Omics data integration
Time-Course Multi-Omics data integration
Time-Course Multi-Omics data integration
Visual Exploration of Omic Datasets Using a Shiny App
Visual Exploration of Omic Datasets Using a Shiny App
Visual Exploration of Omic Datasets Using a Shiny App