Files in Surrogate

Evaluation of Surrogate Endpoints in Clinical Trials

NEWS.md README.md R/MICA.Sample.ContCont.R R/TrialLevelIT.R R/summary.MuContCont.MultS.R R/TrialLevelMA.R R/MufixedContCont.MultS.R R/summary.TwoStageSurvSurv.R R/MetaAnalyticSurvCont.R R/MixedContContIT.R R/summary.TrialLevelIT.R R/summary_ICABinCont.R R/MetaAnalyticSurvCat.R R/MumixedContCont.MultS.R R/FederatedApproachStage2.R R/plot.BinContCombnIT.R R/SimDataSTSBinBin.R R/MaxEntICABinBin.R R/summary.SurvSurv.R R/SummaryMetaAnalyticMTSContCont.R R/Single.Trial.RE.AA.R R/MetaAnalyticSurvBin.R R/plot_ICABinBin.R R/SummaryMaxEntSPFBinBin.R R/SimDataCounterfactualsBinBin.R R/UnimixedContCont.R R/ICA.BinBin.Grid.Sample.Uncert.R R/ICABinBinCounterAssum.R R/summary_SPFBinCont.R R/RandVec.R R/likelihood_copula_models.R R/CausalDiagramContCont.R R/Sim.Data.STS.R R/ICA.BinCont.R R/plot.TrialLevelIT.R R/MaxEntSPFBinBin.R R/UnifixedContCont.R R/ICA.ContCont.MultS.PC.R R/FixedContBinIT.r R/SPP.BinBin.R R/MaxEntContCont.R R/MICAContCont.R R/Data.Processing.R R/ICA.BinCont.BS.R R/plot.TrialLevelMA.R R/FixedBinBinIT.r R/BifixedContCont.R R/plot.PPE.BinBin.R R/plot.Fano.BinBin.R R/plot_SPF.BinCont.R R/sensitivity_intervals.R R/BimixedContCont.R R/ICA.Cont.Cont.MultS.R R/MetaAnalyticSurvSurv.R R/Sim.Data.MTS.R R/MarginalProbs.R R/SummarySPPBinBin.R R/plot.TwoStageSurvSurv.R R/FederatedApproachStage1.R R/CbC.R R/plot.InfoTheoretic.R R/plot.SurvSurv.R R/fit_model_SurvSurv.R R/Pred.TrialT.ContCont.R R/Prentice.R R/ICABinBin.R R/MinSurrContCont.R R/summaryBinContCombnIT.R R/Plot.FixedDiscrDiscrIT.R R/summary_ICABinBin.R R/summary_MaxEntICABinBin.R R/ICA.BinBin.Grid.Sample.R R/CausalDiagramBinBin.R R/ICA.ContCont.MultS.MPC.R R/AA.MultS.R R/ECT.R R/ICA_BinCont_copula.R R/Restrictions.BinBin.R R/LongToWide.R R/goodness_of_fit_SurvSurv.R R/PPE.BinBin.R R/PROC.BinBin.R R/summary.FixedDIscrDiscrIT.R R/plot.MaxEntSPF.BinBin.R R/log_likelihoods.R R/sensitivity_analysis_SurvSurv.R R/ICA_SurvSurv_copula.R R/plot.MetaAnalyticMTS.R R/ICA.Sample.ContCont.R R/Test.Mono.R R/plot.MetaAnalyticSTS.R R/FixedDiscrDiscrIT.R R/ICA.BinBin.Grid.Full.R R/ICABinCont_copula.R R/comb27.BinBin.R R/Sim.Data.Counterfactuals.R R/Bootstrap.MEP.BinBin.R R/plot.comb27.BinBin.R R/summary.PPE.BinBin.R R/summary.Fano.BinBin.R R/FixedContContIT.r R/SurvSurv.R R/sensitivity_analysis_BinCont_copula.R R/ICA.Cont.Cont.MultS_alt.R R/ITCI-Dvine-inference-utils.R R/SPF.BinCont.R R/SummaryTrialLevelMA.R R/plot_MaxEntICABinBin.R R/ISTE.ContCont.R R/Pos.Def.Matrices.R R/SummaryMetaAnalyticSTSContCont.R R/FixedBinContIT.r R/plot.MaxEntContCont.R R/summary_MaxEntContCont.R R/ICAContCont.R R/plot_SPPBinBin.R R/TwoStageSurvSurv.R R/fit_model_BinCont_copula.R R/Fano.BinBin.R R/copula_utils.R R/plot_ICABinCont.R R/SummaryITContCont.R R/utils.R tests/testthat.R tests/testthat/test-ICA_SurvSurv_copula.R tests/testthat/test-MetaAnalyticSurvCat.R tests/testthat/test-likelihood_copula_models.R tests/testthat/test-sensitivity_analysis_BinCont_copula.R tests/testthat/test-ITCI-Dvine-inference-utils.R tests/testthat/test-fit_model_SurvSurv.R tests/testthat/test-goodness_of_fit_SurvSurv.R tests/testthat/test-MetaAnalyticSurvBin.R tests/testthat/test-sensitivity_analysis_SurvSurv.R tests/testthat/test-MetaAnalyticSurvSurv.R tests/testthat/Rplots.pdf tests/testthat/test-ICABinCont_copula.R tests/testthat/test-ICA_BinCont_copula.R tests/testthat/test-copula_utils.R tests/testthat/test-sensitivity_intervals.R tests/testthat/test-MetaAnalyticSurvCont.R tests/testthat/test-log_likelihoods.R tests/testthat/test-fit_model_BinCont_copula.R tests/testthat/fixtures/sensitivity-analysis-results.R tests/testthat/fixtures/fit-and-save-models.R man/Sim.Data.STSBinBin.Rd man/Dvine_ICA_confint.Rd man/MetaAnalyticSurvCat.Rd man/TrialLevelIT.Rd man/loglik_copula_scale.Rd man/plot.InformationTheoreticBinCombn.Rd man/summary.MetaAnalyticSurvSurv.Rd man/summary.MetaAnalyticSurvBin.Rd man/fit_copula_model_BinCont.Rd man/plot.MetaAnalyticSurvSurv.Rd man/Plot.PredTrialTContCont.Rd man/plot.MetaAnalytic.Rd man/prostate.Rd man/Ovarian.Rd man/summary.MetaAnalyticSurvCat.Rd man/gaussian_loglik_copula_scale.Rd man/delta_method_log_mutinfo.Rd man/plot.ICABinBin.Rd man/SPF.BinCont.Rd man/MumixedContCont.MultS.Rd man/plot.MetaAnalyticSurvCat.Rd man/ARMD.MultS.Rd man/ICABinCont.Rd man/gumbel_loglik_copula_scale.Rd man/fit_copula_submodel_BinCont.Rd man/MICA.Sample.ContCont.Rd man/compute_ICA_SurvSurv.Rd man/PPE.BinBin.Rd man/plot.SPF.BinCont.Rd man/PANSS.Rd man/ICA.Sample.ContCont.Rd man/plot.ISTE.ContCont.Rd man/plot.InformationTheoretic.Rd man/plot.SPPBinBin.Rd man/SPP.BinBin.Rd man/Plot.FixedDiscrDiscrIT.Rd man/sensitivity_analysis_BinCont_copula.Rd man/ICABinBinCounterAssum.Rd man/colorectal4.rd man/cdf_fun.Rd man/Schizo.Rd man/summary_level_bootstrap_ICA.Rd man/Schizo_BinCont.Rd man/LongToWide.Rd man/ECT.Rd man/Sim.Data.STS.Rd man/ICA.BinBin.Grid.Sample.Rd man/CausalDiagramContCont.Rd man/sample_deltas_BinCont.Rd man/MufixedContCont.MultS.Rd man/MaxEntSPFBinBin.Rd man/estimate_mutual_information_SurvSurv.Rd man/binary_continuous_loglik.Rd man/plot.MaxEntSPFBinBin.Rd man/plot.MaxEntICABinBin.Rd man/plot.InformationTheoreticSurvSurv.Rd man/ICA.ContCont.MultS.MPC.Rd man/Fano.BinBin.Rd man/sensitivity_intervals_Dvine.Rd man/ARMD.Rd man/marginal_gof_plots_scr.Rd man/marginal_gof_scr_S_plot.Rd man/plot.comb27.BinBin.Rd man/print.MetaAnalyticSurvSurv.Rd man/MICAContCont.Rd man/plot.CausalInference.Rd man/marginal_distribution.Rd man/sample_dvine.Rd man/sensitivity_analysis_SurvSurv_copula.Rd man/pdf_fun.Rd man/plot.Fano.BinBin.Rd man/Bootstrap.MEP.BinBin.Rd man/twostep_BinCont.Rd man/plot.MetaAnalyticSurvCont.Rd man/summary.FederatedApproachStage2.Rd man/ICA.ContCont.Mult_alt.Rd man/plot.MetaAnalyticSurvBin.Rd man/estimate_ICA_BinCont.Rd man/Test.Mono.Rd man/MinSurrContCont.Rd man/SurvSurv.Rd man/ISTE.ContCont.Rd man/ICA_given_model_constructor.Rd man/BimixedContCont.Rd man/CausalDiagramBinBin.Rd man/mean_S_before_T_plot_scr.Rd man/twostep_SurvSurv.Rd man/summary.MetaAnalyticSurvCont.Rd man/RandVec.Rd man/ICAContCont.Rd man/ICA.BinCont.BS.Rd man/BimixedCbCContCont.Rd man/plot.TwoStageSurvSurv.Rd man/Sim.Data.Counterfactuals.Rd man/summary.gen.Rd man/ICA.ContCont.MultS.PC.Rd man/plot.TrialLevelMA.Rd man/Pred.TrialT.ContCont.Rd man/log_likelihood_copula_model.Rd man/print.MetaAnalyticSurvCont.Rd man/colorectal.rd man/plot.MinSurrContCont.Rd man/frank_loglik_copula_scale.Rd man/FederatedApproachStage2.Rd man/Pos.Def.Matrices.Rd man/AA.MultS.Rd man/MarginalProbs.Rd man/Schizo_PANSS.Rd man/plot.MaxEntContCont.Rd man/Sim.Data.CounterfactualsBinBin.Rd man/ICA.BinBin.Grid.Sample.Uncert.Rd man/Prentice.Rd man/fit_model_SurvSurv.Rd man/UnifixedContCont.Rd man/model_fit_measures.Rd man/FixedContBinIT.Rd man/Schizo_Bin.Rd man/new_vine_copula_ss_fit.Rd man/print.MetaAnalyticSurvCat.Rd man/FixedContContIT.Rd man/compute_ICA_BinCont.Rd man/UnimixedContCont.Rd man/Restrictions.BinBin.Rd man/plot.TrialLevelIT.Rd man/plot.ICA.ContCont.Mult.Rd man/MetaAnalyticSurvSurv.Rd man/FixedDiscrDiscrIT.Rd man/Sim.Data.MTS.Rd man/MetaAnalyticSurvCont.Rd man/clayton_loglik_copula_scale.Rd man/MaxEntICAContCont.Rd man/comb27.BinBin.Rd man/ICA.ContCont.MultS.Rd man/MaxEntICABinBin.Rd man/plot.PPE.BinBin.Rd man/print.MetaAnalyticSurvBin.Rd man/TrialLevelMA.Rd man/PROC.BinBin.Rd man/MixedContContIT.Rd man/Single.Trial.RE.AA.Rd man/MetaAnalyticSurvBin.Rd man/BifixedContCont.Rd man/ICABinBin.Rd man/TwoStageSurvSurv.Rd man/FixedBinBinIT.Rd man/FixedBinContIT.Rd man/ICA.BinBin.Grid.Full.Rd man/sample_copula_parameters.Rd man/FederatedApproachStage1.Rd man/plot.ICA.BinCont.Rd