API for UCSCXenaShiny
Interactive Analysis of UCSC Xena Data
| Global functions | |
|---|---|
| %>% | Man page |
| .onAttach | Source code |
| .opt_pancan | Man page |
| TCGA.organ | Man page |
| UCSCXenaShiny | Man page |
| UCSCXenaShiny-package | Man page |
| Zscore | Source code |
| `%:::%` | Source code |
| analyze_gene_drug_response_asso | Man page Source code |
| analyze_gene_drug_response_diff | Man page Source code |
| app_run | Man page Source code |
| available_hosts | Man page Source code |
| ccle_absolute | Man page |
| ccle_info | Man page |
| ccle_info_fine | Man page |
| check_exist_data | Source code |
| check_file | Source code |
| create_quantile_segment_frame | Source code |
| ezcor | Man page Source code |
| ezcor_batch | Man page Source code |
| ezcor_caller | Source code |
| ezcor_partial_cor | Man page Source code |
| geom_split_violin | Source code |
| get_cache_dir | Source code |
| get_ccle_cn_value | Man page Source code |
| get_ccle_gene_value | Man page Source code |
| get_ccle_mutation_status | Man page Source code |
| get_ccle_protein_value | Man page Source code |
| get_data | Source code |
| get_pancan_cn_value | Man page Source code |
| get_pancan_gene_value | Man page Source code |
| get_pancan_methylation_value | Man page Source code |
| get_pancan_miRNA_value | Man page Source code |
| get_pancan_mutation_status | Man page Source code |
| get_pancan_protein_value | Man page Source code |
| get_pancan_transcript_value | Man page Source code |
| get_pancan_value | Man page Source code |
| get_pcawg_APOBEC_mutagenesis_value | Man page Source code |
| get_pcawg_fusion_value | Man page Source code |
| get_pcawg_gene_value | Man page Source code |
| get_pcawg_miRNA_value | Man page Source code |
| get_pcawg_promoter_value | Man page Source code |
| get_run_mode | Source code |
| get_zenodo_dir | Source code |
| gm_mean | Source code |
| keep_cat_cols | Man page Source code |
| load_data | Man page Source code |
| mbind | Source code |
| mol_quick_analysis | Man page Source code |
| parse_pacwg_args | Source code |
| pcawg_info | Man page |
| pcawg_info_fine | Man page |
| pcawg_purity | Man page |
| pcor.mat | Source code |
| pcor.rec | Source code |
| pcor_test | Source code |
| query_custom_feature_value | Source code |
| query_general_id | Source code |
| query_general_value | Man page Source code |
| query_molecule_value | Man page Source code |
| query_pancan_value | Man page Source code |
| query_pcawg_pancan_value | Source code |
| query_tcga_group | Man page Source code |
| query_toil_value_df | Man page Source code Source code |
| query_value | Source code |
| report_dataset_info | Source code |
| rm_cache_dir | Source code |
| save_data | Source code |
| sur_plot | Source code |
| tcga survival analysis | Man page |
| tcga_clinical | Man page |
| tcga_clinical_fine | Man page |
| tcga_genome_instability | Man page |
| tcga_gtex | Man page |
| tcga_purity | Man page |
| tcga_subtypes | Man page |
| tcga_surv | Man page |
| tcga_surv_get | Man page Source code |
| tcga_surv_plot | Man page Source code |
| tcga_tmb | Man page |
| toil_info | Man page |
| try_query_value | Source code |
| vis_ccle_gene_cor | Man page Source code |
| vis_ccle_tpm | Man page Source code |
| vis_dim_dist | Man page Source code |
| vis_gene_TIL_cor | Man page |
| vis_gene_cor | Man page |
| vis_gene_cor_cancer | Man page |
| vis_gene_drug_response_asso | Man page Source code |
| vis_gene_drug_response_diff | Man page Source code |
| vis_gene_immune_cor | Man page |
| vis_gene_msi_cor | Man page |
| vis_gene_pw_cor | Man page Source code |
| vis_gene_stemness_cor | Man page |
| vis_gene_tmb_cor | Man page |
| vis_identifier_cor | Man page Source code |
| vis_identifier_dim_dist | Man page Source code |
| vis_identifier_grp_comparison | Man page Source code |
| vis_identifier_grp_surv | Man page Source code |
| vis_identifier_multi_cor | Man page Source code |
| vis_pancan_anatomy | Man page Source code |
| vis_pcawg_dist | Man page Source code |
| vis_pcawg_gene_cor | Man page Source code |
| vis_pcawg_unicox_tree | Man page Source code |
| vis_toil_Mut | Man page Source code |
| vis_toil_Mut_cancer | Man page |
| vis_toil_TvsN | Man page Source code |
| vis_toil_TvsN_cancer | Man page |
| vis_unicox_tree | Man page Source code |
