Files in adegenet
Exploratory Analysis of Genetic and Genomic Data
MD5
ChangeLog
README.md
NAMESPACE
DESCRIPTION
R/haploGen.R
R/snapclust.R
R/gstat.randtest.R
R/constructors.R
R/glSim.R
R/global_local_tests.R
R/chooseCN.R
R/minorAllele.R
R/haploPop.R
R/handling.R
R/scale.R
R/mutations.R
R/makefreq.R
R/datasets.R
R/glPlot.R
R/auxil.R
R/seqTrack.R
R/coords.monmonier.R
R/propShared.R
R/sequences.R
R/pairDist.R
R/setAs.R
R/HWE.R
R/classes.R
R/dapc.R
R/spca_randtest.R
R/snpposi.R
R/loadingplot.R
R/servers.R
R/accessors.R
R/glHandle.R
R/old2new.R
R/genind2genpop.R
R/compoplot.R
R/basicMethods.R
R/orthobasis.R
R/xvalDapc.R
R/spca.R
R/gengraph.R
R/strataMethods.R
R/doc_C_routines.R
R/dist.genlight.R
R/showmekittens.R
R/export.R
R/export_to_mvmapper.R
R/dist.genpop.R
R/snapclust.choose.k.R
R/glFunctions.R
R/AICc.snapclust.R
R/monmonier.R
R/adegenet.package.R
R/propTyped.R
R/inbreeding.R
R/SNPbin.R
R/import.R
R/zzz.R
R/BIC.snapclust.R
R/KIC.snapclust.R
R/fstat.R
R/hybridize.R
R/AIC.snapclust.R
R/colorplot.R
R/simOutbreak.R
R/snpzip.R
R/hierarchyMethods.R
R/Hs.R
R/find.clust.R
R/PCtest.R
src/snpbin.c
src/sharedAll.c
src/adesub.h
src/adesub.c
src/init.c
src/snpbin.h
src/GLfunctions.c
src/monmonier-utils.c
src/GLfunctions.h
inst/CITATION
inst/dapcServer/ui.R
inst/dapcServer/server.R
inst/files/usflu.fasta
inst/files/swallowtails_loc.csv
inst/files/nancycats.gen
inst/files/pdH1N1-data.csv
inst/files/AFLP.txt
inst/files/pdH1N1-NA.fasta
inst/files/nancycats.str
inst/files/nancycats.gtx
inst/files/mondata1.rda
inst/files/mondata2.rda
inst/files/nancycats.dat
inst/files/pdH1N1-HA.fasta
inst/files/exampleSnpDat.snp
build/partial.rdb
tests/testthat.R
tests/testthat/test-findclust.R
tests/testthat/test_haploGen.R
tests/testthat/test_subset.R
tests/testthat/test_summary.R
tests/testthat/test_accessors.R
tests/testthat/test_import.R
tests/testthat/test_xval.R
tests/testthat/test_hierarchy.R
tests/testthat/test_repool.R
tests/testthat/test_conversion.R
tests/testthat/test_compoplot.R
tests/testthat/test_genlight.R
tests/testthat/test_snapclust.R
tests/testthat/test-seppop.R
tests/testthat/test-genind2genpop.R
tests/testthat/test_constructors.R
tests/testthat/test-prop.R
tests/testthat/test-setAs.R
data/datalist
data/swallowtails.rda
data/rupica.RData
data/sim2pop.rda
data/microbov.rda
data/hybridtoy.RData
data/dapcIllus.rda
data/H3N2.rda
data/spcaIllus.rda
data/eHGDP.rda
data/nancycats.rda
man/AICc.Rd
man/new.genind.Rd
man/xvalDapc.Rd
man/import2genind.Rd
man/hybridtoy.Rd
man/read.PLINK.Rd
man/new.genpop.Rd
man/coords.monmonier.Rd
man/glSim.Rd
man/gengraph.Rd
man/KIC.Rd
man/hierarchy-methods.Rd
man/microbov.Rd
man/strata-methods.Rd
man/read.structure.Rd
man/snapclust.choose.k.Rd
man/virClasses.Rd
man/snpzip.rd
man/propShared.Rd
man/genind2df.Rd
man/genind.Rd
man/old2new.Rd
man/showmekittens.Rd
man/chooseCN.Rd
man/seqTrack.Rd
man/ascore.Rd
man/H3N2.Rd
man/sim2pop.Rd
man/genpop.Rd
man/as.genlight.Rd
man/minorAllele.Rd
man/dapcGraphics.Rd
man/colorplot.Rd
man/Hs.test.Rd
man/dapcIllus.Rd
man/isPoly.Rd
man/swallowtails.Rd
man/fasta2DNAbin.Rd
man/Hs.Rd
man/HWE.Rd
man/snapclust.Rd
man/df2genind.Rd
man/truenames.Rd
man/snpposi.Rd
man/rupica.Rd
man/web.Rd
man/monmonier.Rd
man/nancycats.Rd
man/sequences.Rd
man/dapc.Rd
man/read.genetix.Rd
man/genind2genpop.Rd
man/doc_C_routines.Rd
man/export_to_mvmapper.Rd
man/spca.Rd
man/read.snp.Rd
man/tab.Rd
man/adegenet.package.Rd
man/compoplot.Rd
man/find.clusters.Rd
man/servers.Rd
man/spca.rtests.Rd
man/mutations.Rd
man/as-methods.Rd
man/hybridize.Rd
man/pairDist.Rd
man/BIC.snapclust.Rd
man/auxil.Rd
man/inbreeding.Rd
man/fasta2genlight.Rd
man/seppop.Rd
man/accessors.Rd
man/glPca.Rd
man/spca_randtest.Rd
man/scaleGen.Rd
man/read.fstat.Rd
man/read.genepop.Rd
man/seploc.Rd
man/loadingplot.Rd
man/makefreq.Rd
man/propTyped.Rd
man/AIC.snapclust.Rd
man/eHGDP.Rd
man/repool.Rd
man/haploGen.Rd
man/genlight.Rd
man/spcaIllus.Rd
man/as.SNPbin.Rd
man/selpopsize.Rd
man/SNPbin.Rd
man/glAux.Rd
man/population-methods.Rd
man/dist.genpop.Rd
man/glPlot.Rd
