Global functions | |
---|---|
$<-.bn.fit | Man page |
.coefficients | Source code |
.data.frame | Source code |
.data.frame.column | Source code |
.degree | Source code |
.fitted | Source code |
.nodes | Source code |
.onLoad | Source code |
.onUnload | Source code |
.relabel | Source code |
.relabel.bn | Source code |
.relabel.bn.fit | Source code |
.residuals | Source code |
.table | Source code |
AIC.bn | Man page Source code |
AIC.bn.fit | Man page Source code |
BF | Man page Source code |
BIC.bn | Man page Source code |
BIC.bn.fit | Man page Source code |
H | Man page Source code |
KL | Man page Source code |
`%!in%` | Source code |
acyclic | Man page Source code |
add.node | Man page Source code |
alarm | Man page |
all.equal.bn | Man page Source code |
all.equal.bn.fit | Source code |
allsubs.test | Source code |
alpha.star | Man page Source code |
alpha.star.backend | Source code |
amat | Man page Source code |
amat2arcs | Source code |
amat<- | Man page |
ancestors | Man page Source code |
aracne | Man page Source code |
aracne.backend | Source code |
arc operations | Man page |
arc.operations | Source code |
arc.strength | Man page Source code |
arc.strength.boot | Source code |
arc.strength.custom | Source code |
arc.strength.score | Source code |
arc.strength.test | Source code |
arcs | Man page Source code |
arcs.rbind | Source code |
arcs.to.be.added | Source code |
arcs.to.be.dropped | Source code |
arcs.to.be.reversed | Source code |
arcs.unique | Source code |
arcs2amat | Source code |
arcs2elist | Source code |
arcs2grlabels | Source code |
arcs<- | Man page |
as.bn | Man page Source code |
as.bn.character | Man page Source code |
as.bn.fit | Man page Source code |
as.bn.fit.grain | Man page Source code |
as.bn.grain | Man page Source code |
as.bn.graphAM | Man page Source code |
as.bn.graphNEL | Man page Source code |
as.bn.igraph | Man page Source code |
as.bn.pcAlgo | Man page Source code |
as.character.bn | Man page Source code |
as.grain | Man page Source code |
as.grain.bn | Man page |
as.grain.bn.fit | Man page Source code |
as.graphAM | Man page Source code |
as.graphAM.bn | Man page Source code |
as.graphAM.bn.fit | Man page |
as.graphNEL | Man page Source code |
as.graphNEL.bn | Man page Source code |
as.graphNEL.bn.fit | Man page |
as.igraph | Man page Source code |
as.igraph.bn | Man page Source code |
as.igraph.bn.fit | Man page |
as.lm | Man page Source code |
as.lm.bn | Man page Source code |
as.lm.bn.fit | Man page |
as.lm.bn.fit.gnode | Man page Source code |
asia | Man page |
average.fitted | Source code |
average.fitted.cgnode | Source code |
average.fitted.dnode | Source code |
average.strength | Source code |
averaged.network | Man page Source code |
averaged.network.backend | Source code |
bayesian.classifier | Source code |
bf.strength | Man page Source code |
bf.strength.backend | Source code |
bif.check.banner | Source code |
bif.check.discrete | Source code |
bif.get.cpt.descriptions | Source code |
bif.get.cpt.names | Source code |
bif.get.levels | Source code |
bif.get.node.descriptions | Source code |
bif.get.nodes | Source code |
bif.get.parents | Source code |
bif.get.probabilities | Source code |
bif.preparse | Source code |
bif.write.node | Source code |
bif.write.probabilities | Source code |
blacklist | Man page Source code |
bn class | Man page |
bn-class | Man page |
bn.boot | Man page Source code |
bn.cv | Man page Source code |
bn.cv.algorithm | Source code |
bn.cv.structure | Source code |
bn.fit | Man page Source code |
bn.fit class | Man page |
bn.fit plots | Man page |
bn.fit utilities | Man page |
bn.fit-class | Man page |
bn.fit.assignment.backend | Source code |
bn.fit.backend | Source code |
bn.fit.backend.continuous | Source code |
bn.fit.backend.discrete | Source code |
bn.fit.backend.hard.em | Source code |
bn.fit.backend.hierarchical | Source code |
bn.fit.backend.mixedcg | Source code |
bn.fit.barchart | Man page Source code |
bn.fit.dnode | Man page |
bn.fit.dotplot | Man page Source code |
bn.fit.gnode | Man page |
bn.fit.histogram | Man page Source code |
bn.fit.qqplot | Man page Source code |
bn.fit.xyplot | Man page Source code |
bn.kcv class | Man page |
bn.kcv-class | Man page |
bn.kcv.list class | Man page |
bn.kcv.list-class | Man page |
bn.net | Man page Source code |
bn.recovery | Source code |
bn.strength | Man page |
bn.strength class | Man page |
bn.strength-class | Man page |
bnlearn | Man page Source code |
bnlearn-package | Man page |
boot.strength | Man page Source code |
bootstrap.backend | Source code |
build.blacklist | Source code |
build.whitelist | Source code |
cache.partial.structure | Source code |
cache.structure | Source code |
cextend | Man page Source code |
cgsd | Source code |
chart.glyph | Source code |
check.B | Source code |
check.alpha | Source code |
check.amat | Source code |
check.and.load.package | Source code |
check.arc.generation.prob | Source code |
check.arcs | Source code |
check.arcs.against.assumptions | Source code |
check.batching | Source code |
check.bn | Source code |
check.bn.naive | Source code |
check.bn.or.fit | Source code |
check.bn.strength | Source code |
check.bn.strength.vs.bn | Source code |
check.bn.tan | Source code |
check.bn.vs.data | Source code |
check.bootsize | Source code |
check.bootstrap.args | Source code |
check.burn.in | Source code |
check.cgnode.rvalue | Source code |
check.cgnode.rvalue.vs.parents | Source code |
check.cgnode.vs.cgnode | Source code |
check.chart.grid | Source code |
check.classifier.args | Source code |
check.classifier.prior | Source code |
check.cluster | Source code |
check.colour | Source code |
check.covariance | Source code |
check.cpq.args | Source code |
check.criterion | Source code |
check.custom.score.arguments | Source code |
check.custom.score.function | Source code |
check.custom.test.arguments | Source code |
check.custom.test.function | Source code |
check.customlist | Source code |
check.cutpoints | Source code |
check.cv.args | Source code |
check.cv.folds | Source code |
check.cv.holdout.size | Source code |
check.cv.method | Source code |
check.cv.runs | Source code |
check.cv.splits | Source code |
check.data | Source code |
check.data.frame.finite | Source code |
check.discrete.parents.configuration | Source code |
check.discretization.args | Source code |
check.discretization.method | Source code |
check.dnode.rvalue | Source code |
check.dnode.rvalue.vs.parents | Source code |
check.dnode.vs.dnode | Source code |
check.enumeration.args | Source code |
check.evidence | Source code |
check.experimental | Source code |
check.extended.penalty | Source code |
check.fit | Source code |
check.fit.node.vs.data | Source code |
check.fit.vs.data | Source code |
check.fitted.vs.fitted | Source code |
check.fitting.args | Source code |
check.fitting.method | Source code |
check.gnode.rvalue | Source code |
check.gnode.rvalue.vs.parents | Source code |
check.gnode.vs.gnode | Source code |
check.graph.generation.args | Source code |
check.graph.hyperparameters | Source code |
check.graph.narcs | Source code |
check.graph.prior | Source code |
check.graph.root.nodes | Source code |
check.ibreaks | Source code |
check.idisc | Source code |
check.imputation.extra.args | Source code |
check.imputation.method | Source code |
check.iss | Source code |
check.iss.mu | Source code |
check.iss.w | Source code |
check.l | Source code |
check.label | Source code |
check.largest.sx.set | Source code |
check.learning.algorithm | Source code |
check.learning.algorithm.args | Source code |
check.logical | Source code |
check.loglik.threshold | Source code |
check.loss | Source code |
check.loss.args | Source code |
check.loss.target | Source code |
check.lty | Source code |
check.max.degree | Source code |
check.max.iter | Source code |
check.max.tabu | Source code |
check.maxp | Source code |
check.mi.estimator | Source code |
check.modelstring | Source code |
check.newdata | Source code |
check.node.groups | Source code |
check.nodes | Source code |
check.nu | Source code |
check.params.threshold | Source code |
check.particles | Source code |
check.penalty | Source code |
check.perturb | Source code |
check.prediction.extra.args | Source code |
check.prediction.method | Source code |
check.replicates | Source code |
check.restart | Source code |
check.rvalue.vs.cgnode | Source code |
check.rvalue.vs.dnode | Source code |
check.rvalue.vs.gnode | Source code |
check.score | Source code |
check.score.args | Source code |
check.start.fitted | Source code |
check.tabu | Source code |
check.test | Source code |
check.test.args | Source code |
check.thinning | Source code |
check.threshold | Source code |
check.unused.args | Source code |
check.weights | Source code |
children | Man page Source code |
children<- | Man page |
chow.liu | Man page Source code |
chow.liu.backend | Source code |
ci.test | Man page Source code |
ci.test.character | Source code |
ci.test.vector | Source code |
classification.error | Source code |
clgaussian.test | Man page |
coef.bn | Source code |
coef.bn.fit | Man page Source code |
coef.bn.fit.cgnode | Man page Source code |
coef.bn.fit.dnode | Man page Source code |
coef.bn.fit.gnode | Man page Source code |
coef.bn.fit.onode | Man page |
collect.metadata | Source code |
colliders | Man page Source code |
colliders.backend | Source code |
compact.exact.discrete.prediction | Source code |
compare | Man page Source code |
compare.backend | Source code |
compelled.arcs | Man page Source code |
complete.graph | Man page Source code |
conditional.distribution | Source code |
conditional.mvnorm | Source code |
conditional.probability.query | Source code |
configs | Man page Source code |
configurations | Source code |
constraint-based algorithms | Man page |
coronary | Man page |
count.all.dags | Source code |
count.by.arcs | Source code |
count.by.roots | Source code |
count.by.topological.ordering | Source code |
count.disregarding.one.arc | Source code |
count.graphs | Man page Source code |
count.observed.values | Source code |
cpdag | Man page Source code |
cpdag.arc.extension | Source code |
cpdag.backend | Source code |
cpdag.extension | Source code |
cpdist | Man page Source code |
cpquery | Man page Source code |
cptattr | Source code |
crossvalidation | Source code |
cs.completed.prior | Source code |
custom.fit | Man page Source code |
custom.fit.backend | Source code |
custom.strength | Man page Source code |
dag2ug.backend | Source code |
data.type | Source code |
dedup | Man page Source code |
dedup.backend | Source code |
degree | Man page |
degree,bn-method | Man page |
degree,bn.fit-method | Man page |
degree,bn.naive-method | Man page |
degree,bn.tan-method | Man page |
descendants | Man page Source code |
determine.fitted.class | Source code |
directed | Man page Source code |
directed.arcs | Man page Source code |
discrete.prediction | Source code |
discretize | Man page Source code |
discretize.backend | Source code |
drop.arc | Man page Source code |
drop.arc.backend | Source code |
drop.edge | Man page Source code |
drop.edge.backend | Source code |
dsc.check.banner | Source code |
dsc.check.discrete | Source code |
dsc.get.levels | Source code |
dsc.get.node.descriptions | Source code |
dsc.get.nodes | Source code |
dsc.get.parents | Source code |
dsc.get.probabilities | Source code |
dsc.preparse | Source code |
dsc.write.node | Source code |
dsc.write.probabilities | Source code |
dsep | Man page Source code |
dseparation | Source code |
elist2arcs | Source code |
em-based algorithms | Man page |
empty.graph | Man page Source code |
empty.graph.backend | Source code |
entropy.loss | Source code |
equal.backend.bn | Source code |
equal.backend.fit | Source code |
exact.discrete.imputation | Source code |
exact.discrete.prediction | Source code |
exact.gaussian.imputation | Source code |
exact.gaussian.prediction | Source code |
explode | Source code |
fake.markov.blanket | Source code |
fast.ia.markov.blanket | Source code |
fast.iamb | Man page Source code |
fast.incremental.association | Source code |
fcat | Source code |
fit.dummy.df | Source code |
fit2arcs | Source code |
fitted.bn.fit | Man page Source code |
fitted.bn.fit.cgnode | Man page |
fitted.bn.fit.dnode | Man page Source code |
fitted.bn.fit.gnode | Man page Source code |
foreign.get.children | Source code |
from.bn.fit.to.grain | Source code |
from.grain.to.bn.fit | Source code |
from.grain.to.bn.fit.with.evidence | Source code |
full.spec.backend | Source code |
gRain integration | Man page |
gaussian.prediction | Source code |
gaussian.test | Man page |
gbn2mvnorm | Man page Source code |
gbn2mvnorm.backend | Source code |
grain.get.children | Source code |
grain.query | Source code |
graph enumeration | Man page |
graph generation utilities | Man page |
graph integration | Man page |
graph utilities | Man page |
graphviz.backend | Source code |
graphviz.chart | Man page Source code |
graphviz.chart.backend | Source code |
graphviz.compare | Man page Source code |
graphviz.compare.backend | Source code |
graphviz.plot | Man page Source code |
greedy.search | Source code |
grow.shrink | Source code |
gs | Man page Source code |
gs.markov.blanket | Source code |
h2pc | Man page Source code |
hailfinder | Man page |
hamming | Man page Source code |
hamming.distance | Source code |
has.argument | Source code |
has.path | Source code |
hc | Man page Source code |
hill.climbing | Source code |
how.many | Source code |
hpc | Man page Source code |
hybrid algorithms | Man page |
hybrid.pc.backend | Source code |
hybrid.pc.de.pcs | Source code |
hybrid.pc.de.sps | Source code |
hybrid.pc.filter | Source code |
hybrid.pc.heuristic | Source code |
hybrid.pc.nbr.search | Source code |
hybrid.search | Source code |
ia.detect.infinite.loop | Source code |
ia.fdr.markov.blanket | Source code |
ia.markov.blanket | Source code |
iamb | Man page Source code |
iamb.fdr | Man page Source code |
ide.cozman.graph | Source code |
identifiable | Man page Source code |
igraph integration | Man page |
impute | Man page Source code |
impute.backend | Source code |
impute.backend.exact | Source code |
impute.backend.likelihood.weighting | Source code |
impute.backend.parents | Source code |
in.degree | Man page Source code |
incident.arcs | Man page Source code |
inclusion.threshold | Man page Source code |
incoming.arcs | Man page Source code |
increment.test.counter | Man page Source code |
incremental.association | Source code |
incremental.association.fdr | Source code |
indep.test | Source code |
independence tests | Man page |
independence-tests | Man page |
insurance | Man page |
inter.ia.markov.blanket | Source code |
inter.iamb | Man page Source code |
inter.incremental.association | Source code |
is | Source code |
is.acyclic | Source code |
is.bn.fit.ill.defined | Source code |
is.dag | Source code |
is.directed | Source code |
is.listed | Source code |
is.logical.vector | Source code |
is.ndmatrix | Source code |
is.non.negative | Source code |
is.non.negative.integer | Source code |
is.nonnegative.vector | Source code |
is.pdag | Source code |
is.positive | Source code |
is.positive.integer | Source code |
is.positive.vector | Source code |
is.probability | Source code |
is.probability.vector | Source code |
is.real.number | Source code |
is.real.vector | Source code |
is.row.equal | Source code |
is.score.decomposable | Source code |
is.score.equivalent | Source code |
is.string | Source code |
is.string.vector | Source code |
is.undirected | Source code |
is.vector | Source code |
isClusterRunning | Source code |
isolated.nodes | Man page Source code |
joint.discretize.backend | Source code |
kfold.loss.postprocess | Source code |
kullback.leibler | Source code |
kullback.leibler.conditional.gaussian | Source code |
kullback.leibler.discrete | Source code |
kullback.leibler.gaussian | Source code |
largest.cex | Source code |
lattice.cv.bwplot | Source code |
lattice.discrete.backend | Source code |
lattice.gaussian.backend | Source code |
leaf.nodes | Man page Source code |
learn.arc.directions | Source code |
learn.mb | Man page Source code |
learn.nbr | Man page Source code |
learning.test | Man page |
lighter.colour | Source code |
likelihood.weighting.prediction | Source code |
list.illegal.arcs | Source code |
lizards | Man page |
lm integration | Man page |
lm.refit.node | Source code |
local discovery algorithms | Man page |
logLik.bn | Man page Source code |
logLik.bn.fit | Man page Source code |
logic.distribution | Source code |
logic.sampling | Source code |
loglikelihood | Source code |
loss | Man page Source code |
loss.function | Source code |
lrm.round | Source code |
lwds.from.pvalues | Source code |
lwds.from.scores | Source code |
marginal.discretize.backend | Source code |
marks | Man page |
match.arcs.and.strengths | Source code |
match.bn | Source code |
match.brace | Source code |
maxmin.pc | Source code |
maxmin.pc.forward.phase | Source code |
maxmin.pc.heuristic.optimized | Source code |
mb | Man page Source code |
mb.backend | Source code |
mb.fitted | Source code |
mb2arcs | Source code |
mean.bn.fit | Source code |
mean.bn.strength | Man page Source code |
mi.matrix | Source code |
misc utilities | Man page |
mixedcg.prediction | Source code |
mmhc | Man page Source code |
mmpc | Man page Source code |
model string utilities | Man page |
model2network | Man page Source code |
model2network.backend | Source code |
modelstring | Man page Source code |
modelstring.backend | Source code |
modelstring<- | Man page |
moral | Man page Source code |
mpe.discrete.query | Source code |
mpe.gaussian.query | Source code |
mse.loss | Source code |
mutilated | Man page Source code |
mutilated.backend.bn | Source code |
mutilated.backend.fitted | Source code |
mvnorm2gbn | Man page Source code |
mvnorm2gbn.backend | Source code |
nSlaves | Source code |
naive.bayes | Man page Source code |
naive.bayes.backend | Source code |
naive.classifier | Source code |
narcs | Man page Source code |
narcs.backend | Source code |
nbr | Man page Source code |
nbr.backend | Source code |
nbr2arcs | Source code |
ndsubset | Source code |
neighbour | Source code |
net.check.banner | Source code |
net.check.discrete | Source code |
net.get.cpt.descriptions | Source code |
net.get.cpt.names | Source code |
net.get.levels | Source code |
net.get.node.descriptions | Source code |
net.get.nodes | Source code |
net.get.parents | Source code |
net.get.probabilities | Source code |
net.write.node | Source code |
net.write.probabilities | Source code |
network classifiers | Man page |
network scores | Man page |
network-classifiers | Man page |
network-scores | Man page |
network.score | Source code |
nnodes | Man page Source code |
noattr | Source code |
node operations | Man page |
node ordering utilities | Man page |
node.ordering | Man page Source code |
nodes | Man page |
nodes,bn-method | Man page |
nodes,bn.fit-method | Man page |
nodes,bn.naive-method | Man page |
nodes,bn.tan-method | Man page |
nodes<- | Man page |
nodes<-,bn-method | Man page |
nodes<-,bn.fit-method | Man page |
nodes<-,bn.naive-method | Man page |
nodes<-,bn.tan-method | Man page |
normalize.cpt | Source code |
nparams | Man page Source code |
nparams.backend | Source code |
nparams.fitted | Source code |
ntests | Man page Source code |
obs.per.cell | Source code |
ordered.graph | Source code |
ordering2blacklist | Man page Source code |
out.degree | Man page Source code |
outgoing.arcs | Man page Source code |
parents | Man page Source code |
parents<- | Man page |
path | Man page |
path,bn-method | Man page |
path,bn.fit-method | Man page |
path,bn.naive-method | Man page |
path,bn.tan-method | Man page |
path.exists | Man page Source code |
pc.heuristic | Source code |
pc.stable | Man page Source code |
pc.stable.backend | Source code |
pcalg integration | Man page |
pdag2dag | Man page Source code |
pdag2dag.backend | Source code |
per.node.score | Source code |
perturb.backend | Source code |
plot.bn | Man page Source code |
plot.bn.fit | Source code |
plot.bn.kcv | Man page Source code |
plot.bn.kcv.list | Man page Source code |
plot.bn.strength | Man page Source code |
predict.backend | Source code |
predict.bn.fit | Man page Source code |
predict.bn.naive | Man page Source code |
predict.bn.tan | Man page |
predictive.correlation | Source code |
print.bn | Source code |
print.bn.fit | Source code |
print.bn.fit.cgnode | Source code |
print.bn.fit.dnode | Source code |
print.bn.fit.gnode | Source code |
print.bn.kcv | Source code |
print.bn.kcv.list | Source code |
print.bn.tan | Source code |
query.partitioning | Source code |
random.graph | Man page Source code |
random.graph.backend | Source code |
rbn | Man page Source code |
rbn.backend | Source code |
read.bif | Man page Source code |
read.dsc | Man page Source code |
read.foreign.backend | Source code |
read.net | Man page Source code |
reduce.fitted | Source code |
reduce.predictors.for.exact.inference | Source code |
remove.node | Man page Source code |
rename.nodes | Man page Source code |
reorder.data.and.metadata | Source code |
reset.test.counter | Man page Source code |
residuals.bn.fit | Man page Source code |
residuals.bn.fit.cgnode | Man page |
residuals.bn.fit.dnode | Man page Source code |
residuals.bn.fit.gnode | Man page Source code |
reverse.arc | Man page Source code |
reverse.arc.backend | Source code |
reversible.arcs | Man page Source code |
robust.score.difference | Source code |
root.leaf.nodes | Source code |
root.nodes | Man page Source code |
roundrobin.test | Source code |
rsmax2 | Man page Source code |
sanitize.levels | Source code |
sanitize.plot.dots | Source code |
score | Man page |
score,bn-method | Man page |
score,bn.naive-method | Man page |
score,bn.tan-method | Man page |
score-based algorithms | Man page |
score.delta | Source code |
set.arc | Man page Source code |
set.arc.direction | Source code |
set.edge | Man page Source code |
set.edge.backend | Source code |
set2blacklist | Man page Source code |
shannon.entropy | Source code |
shannon.entropy.conditional.gaussian | Source code |
shannon.entropy.discrete | Source code |
shannon.entropy.gaussian | Source code |
shd | Man page Source code |
shielded.colliders | Man page Source code |
si.hiton.pc | Man page Source code |
si.hiton.pc.backend | Source code |
si.hiton.pc.backward | Source code |
si.hiton.pc.heuristic | Source code |
sigma | Man page |
sigma.bn.fit | Man page Source code |
sigma.bn.fit.cgnode | Man page Source code |
sigma.bn.fit.dnode | Source code |
sigma.bn.fit.gnode | Man page Source code |
single-node local discovery | Man page |
singular | Man page Source code |
skeleton | Man page Source code |
slaves.setup | Source code |
smaller | Source code |
smartSapply | Source code |
spouses | Man page Source code |
strength.plot | Man page Source code |
strength2lwd | Source code |
structural.em | Man page Source code |
structural.hamming.distance | Source code |
structure learning | Man page |
structure-learning | Man page |
subgraph | Man page Source code |
subgraph.backend | Source code |
subsets | Source code |
tabu | Man page Source code |
tabu.search | Source code |
tan.backend | Source code |
targeted.exact.discrete.prediction | Source code |
test.counter | Man page Source code |
threshold | Source code |
tiers.backend | Source code |
tiers2blacklist | Man page Source code |
topological.ordering | Source code |
tree.bayes | Man page Source code |
tree.size | Source code |
tryMethod | Source code |
underlined | Source code |
undirected.arcs | Man page Source code |
unshielded.colliders | Man page Source code |
vstruct.apply | Source code |
vstruct.detect | Source code |
vstructs | Man page Source code |
wcat | Source code |
weighting.distribution | Source code |
weighting.sampling | Source code |
which.directed | Source code |
which.listed | Source code |
which.undirected | Source code |
whitelist | Man page Source code |
whitelists and blacklists | Man page |
whitelists-blacklists | Man page |
write.bif | Man page Source code |
write.dot | Man page Source code |
write.dot.backend | Source code |
write.dsc | Man page Source code |
write.foreign.backend | Source code |
write.net | Man page Source code |
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