bnlearn
Bayesian Network Structure Learning, Parameter Learning and Inference

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bnlearn: Bayesian Network Structure Learning, Parameter Learning and Inference
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API for bnlearn
Bayesian Network Structure Learning, Parameter Learning and Inference

Global functions
$<-.bn.fit Man page
.coefficients Source code
.data.frame Source code
.data.frame.column Source code
.degree Source code
.fitted Source code
.nodes Source code
.onLoad Source code
.onUnload Source code
.relabel Source code
.relabel.bn Source code
.relabel.bn.fit Source code
.residuals Source code
.table Source code
AIC.bn Man page Source code
AIC.bn.fit Man page Source code
BF Man page Source code
BIC.bn Man page Source code
BIC.bn.fit Man page Source code
KL Man page Source code
ROCR integration Man page
`%!in%` Source code
acyclic Man page Source code
add.node Man page Source code
alarm Man page
all.equal.bn Man page Source code
all.equal.bn.fit Source code
allsubs.test Source code
alpha.star Man page Source code
alpha.star.backend Source code
amat Man page Source code
amat2arcs Source code
amat<- Man page
ancestors Man page Source code
aracne Man page Source code
aracne.backend Source code
arc operations Man page
arc.operations Source code
arc.strength Man page Source code
arc.strength.boot Source code
arc.strength.custom Source code
arc.strength.score Source code
arc.strength.test Source code
arcs Man page Source code
arcs.rbind Source code
arcs.to.be.added Source code
arcs.to.be.dropped Source code
arcs.to.be.reversed Source code
arcs.unique Source code
arcs2amat Source code
arcs2elist Source code
arcs2grlabels Source code
arcs<- Man page
as.bn Man page Source code
as.bn.character Man page Source code
as.bn.fit Man page Source code
as.bn.fit.grain Man page Source code
as.bn.grain Man page Source code
as.bn.graphAM Man page Source code
as.bn.graphNEL Man page Source code
as.bn.igraph Man page Source code
as.bn.pcAlgo Man page Source code
as.character.bn Man page Source code
as.grain Man page Source code
as.grain.bn Man page
as.grain.bn.fit Man page Source code
as.graphAM Man page Source code
as.graphAM.bn Man page Source code
as.graphAM.bn.fit Man page
as.graphNEL Man page Source code
as.graphNEL.bn Man page Source code
as.graphNEL.bn.fit Man page
as.igraph Man page Source code
as.igraph.bn Man page Source code
as.igraph.bn.fit Man page
as.lm Man page Source code
as.lm.bn Man page Source code
as.lm.bn.fit Man page
as.lm.bn.fit.gnode Man page Source code
as.prediction Man page Source code
as.prediction.bn.strength Man page Source code
asia Man page
average.fitted Source code
average.fitted.cgnode Source code
average.fitted.dnode Source code
average.strength Source code
averaged.network Man page Source code
averaged.network.backend Source code
bayesian.classifier Source code
bf.strength Man page Source code
bf.strength.backend Source code
bif.check.banner Source code
bif.check.discrete Source code
bif.get.cpt.descriptions Source code
bif.get.cpt.names Source code
bif.get.levels Source code
bif.get.node.descriptions Source code
bif.get.nodes Source code
bif.get.parents Source code
bif.get.probabilities Source code
bif.preparse Source code
bif.write.node Source code
bif.write.probabilities Source code
blacklist Man page Source code
bn class Man page
bn-class Man page
bn.boot Man page Source code
bn.cv Man page Source code
bn.cv.algorithm Source code
bn.cv.structure Source code
bn.fit Man page Source code
bn.fit class Man page
bn.fit plots Man page
bn.fit utilities Man page
bn.fit-class Man page
bn.fit.assignment.backend Source code
bn.fit.backend Source code
bn.fit.backend.continuous Source code
bn.fit.backend.discrete Source code
bn.fit.backend.hard.em Source code
bn.fit.backend.hierarchical Source code
bn.fit.backend.mixedcg Source code
bn.fit.barchart Man page Source code
bn.fit.dnode Man page
bn.fit.dotplot Man page Source code
bn.fit.gnode Man page
bn.fit.histogram Man page Source code
bn.fit.qqplot Man page Source code
bn.fit.xyplot Man page Source code
bn.kcv class Man page
bn.kcv-class Man page
bn.kcv.list class Man page
bn.kcv.list-class Man page
bn.net Man page Source code
bn.recovery Source code
bn.strength Man page
bn.strength class Man page
bn.strength-class Man page
bnlearn Man page Source code
bnlearn-package Man page
boot.strength Man page Source code
bootstrap.backend Source code
build.blacklist Source code
build.whitelist Source code
cache.partial.structure Source code
cache.structure Source code
cextend Man page Source code
cgsd Source code
chart.glyph Source code
check.B Source code
check.alpha Source code
check.amat Source code
check.and.load.package Source code
check.arc.generation.prob Source code
check.arcs Source code
check.arcs.against.assumptions Source code
check.batching Source code
check.bn Source code
check.bn.naive Source code
check.bn.or.fit Source code
check.bn.strength Source code
check.bn.strength.vs.bn Source code
check.bn.tan Source code
check.bn.vs.data Source code
check.bootsize Source code
check.bootstrap.args Source code
check.burn.in Source code
check.cgnode.rvalue Source code
check.cgnode.rvalue.vs.parents Source code
check.cgnode.vs.cgnode Source code
check.chart.grid Source code
check.classifier.args Source code
check.classifier.prior Source code
check.cluster Source code
check.colour Source code
check.covariance Source code
check.cpq.args Source code
check.criterion Source code
check.custom.score.arguments Source code
check.custom.score.function Source code
check.customlist Source code
check.cutpoints Source code
check.cv.args Source code
check.cv.folds Source code
check.cv.holdout.size Source code
check.cv.method Source code
check.cv.runs Source code
check.cv.splits Source code
check.data Source code
check.data.frame.finite Source code
check.discrete.parents.configuration Source code
check.discretization.args Source code
check.discretization.method Source code
check.dnode.rvalue Source code
check.dnode.rvalue.vs.parents Source code
check.dnode.vs.dnode Source code
check.enumeration.args Source code
check.evidence Source code
check.experimental Source code
check.extended.penalty Source code
check.fit Source code
check.fit.node.vs.data Source code
check.fit.vs.data Source code
check.fitted.vs.fitted Source code
check.fitting.args Source code
check.fitting.method Source code
check.gnode.rvalue Source code
check.gnode.rvalue.vs.parents Source code
check.gnode.vs.gnode Source code
check.graph.generation.args Source code
check.graph.hyperparameters Source code
check.graph.narcs Source code
check.graph.prior Source code
check.graph.root.nodes Source code
check.ibreaks Source code
check.idisc Source code
check.imputation.extra.args Source code
check.imputation.method Source code
check.iss Source code
check.iss.mu Source code
check.iss.w Source code
check.l Source code
check.label Source code
check.largest.sx.set Source code
check.learning.algorithm Source code
check.learning.algorithm.args Source code
check.logical Source code
check.loglik.threshold Source code
check.loss Source code
check.loss.args Source code
check.loss.target Source code
check.lty Source code
check.max.degree Source code
check.max.iter Source code
check.max.tabu Source code
check.maxp Source code
check.mi.estimator Source code
check.modelstring Source code
check.newdata Source code
check.node.groups Source code
check.nodes Source code
check.nu Source code
check.particles Source code
check.penalty Source code
check.perturb Source code
check.prediction.extra.args Source code
check.prediction.method Source code
check.replicates Source code
check.restart Source code
check.rvalue.vs.cgnode Source code
check.rvalue.vs.dnode Source code
check.rvalue.vs.gnode Source code
check.score Source code
check.score.args Source code
check.start.fitted Source code
check.tabu Source code
check.test Source code
check.thinning Source code
check.threshold Source code
check.unused.args Source code
check.weights Source code
children Man page Source code
children<- Man page
chow.liu Man page Source code
chow.liu.backend Source code
ci.test Man page Source code
ci.test.character Source code
ci.test.vector Source code
classification.error Source code
clgaussian.test Man page
coef.bn.fit Man page Source code
coef.bn.fit.cgnode Man page Source code
coef.bn.fit.dnode Man page Source code
coef.bn.fit.gnode Man page Source code
coef.bn.fit.onode Man page
collect.metadata Source code
colliders Man page Source code
colliders.backend Source code
compact.exact.discrete.prediction Source code
compare Man page Source code
compare.backend Source code
compelled.arcs Man page Source code
complete.graph Man page Source code
conditional.distribution Source code
conditional.mvnorm Source code
conditional.probability.query Source code
configs Man page Source code
configurations Source code
constraint-based algorithms Man page
coronary Man page
count.all.dags Source code
count.by.arcs Source code
count.by.roots Source code
count.by.topological.ordering Source code
count.disregarding.one.arc Source code
count.graphs Man page Source code
count.observed.values Source code
cpdag Man page Source code
cpdag.arc.extension Source code
cpdag.backend Source code
cpdag.extension Source code
cpdist Man page Source code
cpquery Man page Source code
cptattr Source code
crossvalidation Source code
cs.completed.prior Source code
custom.fit Man page Source code
custom.fit.backend Source code
custom.strength Man page Source code
dag2ug.backend Source code
data.type Source code
dedup Man page Source code
dedup.backend Source code
degree Man page
degree,bn-method Man page
degree,bn.fit-method Man page
degree,bn.naive-method Man page
degree,bn.tan-method Man page
descendants Man page Source code
determine.fitted.class Source code
directed Man page Source code
directed.arcs Man page Source code
discrete.prediction Source code
discretize Man page Source code
discretize.backend Source code
drop.arc Man page Source code
drop.arc.backend Source code
drop.edge Man page Source code
drop.edge.backend Source code
dsc.check.banner Source code
dsc.check.discrete Source code
dsc.get.levels Source code
dsc.get.node.descriptions Source code
dsc.get.nodes Source code
dsc.get.parents Source code
dsc.get.probabilities Source code
dsc.preparse Source code
dsc.write.node Source code
dsc.write.probabilities Source code
dsep Man page Source code
dseparation Source code
elist2arcs Source code
em-based algorithms Man page
empty.graph Man page Source code
empty.graph.backend Source code
entropy.loss Source code
equal.backend.bn Source code
equal.backend.fit Source code
exact.discrete.imputation Source code
exact.discrete.prediction Source code
exact.gaussian.imputation Source code
exact.gaussian.prediction Source code
explode Source code
fake.markov.blanket Source code
fast.ia.markov.blanket Source code
fast.iamb Man page Source code
fast.incremental.association Source code
fcat Source code
fit.dummy.df Source code
fit2arcs Source code
fitted.bn.fit Man page Source code
fitted.bn.fit.cgnode Man page
fitted.bn.fit.dnode Man page Source code
fitted.bn.fit.gnode Man page Source code
foreign.get.children Source code
from.bn.fit.to.grain Source code
from.grain.to.bn.fit Source code
from.grain.to.bn.fit.with.evidence Source code
full.spec.backend Source code
gRain integration Man page
gaussian.prediction Source code
gaussian.test Man page
gbn2mvnorm Man page Source code
gbn2mvnorm.backend Source code
grain.get.children Source code
graph enumeration Man page
graph generation utilities Man page
graph integration Man page
graph utilities Man page
graphviz.backend Source code
graphviz.chart Man page Source code
graphviz.chart.backend Source code
graphviz.compare Man page Source code
graphviz.compare.backend Source code
graphviz.plot Man page Source code
greedy.search Source code
grow.shrink Source code
gs Man page Source code
gs.markov.blanket Source code
h2pc Man page Source code
hailfinder Man page
hamming Man page Source code
hamming.distance Source code
has.argument Source code
has.path Source code
hc Man page Source code
hill.climbing Source code
how.many Source code
hpc Man page Source code
hybrid algorithms Man page
hybrid.pc.backend Source code
hybrid.pc.de.pcs Source code
hybrid.pc.de.sps Source code
hybrid.pc.filter Source code
hybrid.pc.heuristic Source code
hybrid.pc.nbr.search Source code
hybrid.search Source code
ia.detect.infinite.loop Source code
ia.fdr.markov.blanket Source code
ia.markov.blanket Source code
iamb Man page Source code
iamb.fdr Man page Source code
ide.cozman.graph Source code
igraph integration Man page
impute Man page Source code
impute.backend Source code
impute.backend.exact Source code
impute.backend.likelihood.weighting Source code
impute.backend.parents Source code
in.degree Man page Source code
incident.arcs Man page Source code
inclusion.threshold Man page Source code
incoming.arcs Man page Source code
increment.test.counter Man page Source code
incremental.association Source code
incremental.association.fdr Source code
indep.test Source code
independence tests Man page
independence-tests Man page
insurance Man page
inter.ia.markov.blanket Source code
inter.iamb Man page Source code
inter.incremental.association Source code
is Source code
is.acyclic Source code
is.bn.fit.ill.defined Source code
is.dag Source code
is.directed Source code
is.listed Source code
is.logical.vector Source code
is.ndmatrix Source code
is.non.negative Source code
is.non.negative.integer Source code
is.nonnegative.vector Source code
is.pdag Source code
is.positive Source code
is.positive.integer Source code
is.positive.vector Source code
is.probability Source code
is.probability.vector Source code
is.real.number Source code
is.real.vector Source code
is.row.equal Source code
is.score.decomposable Source code
is.score.equivalent Source code
is.string Source code
is.string.vector Source code
is.undirected Source code
is.vector Source code
isClusterRunning Source code
joint.discretize.backend Source code
kfold.loss.postprocess Source code
kullback.leibler Source code
kullback.leibler.discrete Source code
kullback.leibler.gaussian Source code
largest.cex Source code
lattice.cv.bwplot Source code
lattice.discrete.backend Source code
lattice.gaussian.backend Source code
leaf.nodes Man page Source code
learn.arc.directions Source code
learn.mb Man page Source code
learn.nbr Man page Source code
learning.test Man page
lighter.colour Source code
likelihood.weighting.prediction Source code
list.illegal.arcs Source code
lizards Man page
lm integration Man page
lm.refit.node Source code
local discovery algorithms Man page
logLik.bn Man page Source code
logLik.bn.fit Man page Source code
logic.distribution Source code
logic.sampling Source code
loglikelihood Source code
loss Man page Source code
loss.function Source code
lrm.round Source code
lwds.from.pvalues Source code
lwds.from.scores Source code
marginal.discretize.backend Source code
marks Man page
match.arcs.and.strengths Source code
match.bn Source code
match.brace Source code
maxmin.pc Source code
maxmin.pc.forward.phase Source code
maxmin.pc.heuristic.optimized Source code
mb Man page Source code
mb.backend Source code
mb.fitted Source code
mb2arcs Source code
mean.bn.fit Source code
mean.bn.strength Man page Source code
mi.matrix Source code
misc utilities Man page
mixedcg.prediction Source code
mmhc Man page Source code
mmpc Man page Source code
model string utilities Man page
model2network Man page Source code
model2network.backend Source code
modelstring Man page Source code
modelstring.backend Source code
modelstring<- Man page
moral Man page Source code
mpe.discrete.query Source code
mpe.gaussian.query Source code
mse.loss Source code
mutilated Man page Source code
mutilated.backend.bn Source code
mutilated.backend.fitted Source code
mvnorm2gbn Man page Source code
mvnorm2gbn.backend Source code
nSlaves Source code
naive.bayes Man page Source code
naive.bayes.backend Source code
naive.classifier Source code
narcs Man page Source code
narcs.backend Source code
nbr Man page Source code
nbr.backend Source code
nbr2arcs Source code
ndsubset Source code
neighbour Source code
net.check.banner Source code
net.check.discrete Source code
net.get.cpt.descriptions Source code
net.get.cpt.names Source code
net.get.levels Source code
net.get.node.descriptions Source code
net.get.nodes Source code
net.get.parents Source code
net.get.probabilities Source code
net.write.node Source code
net.write.probabilities Source code
network classifiers Man page
network scores Man page
network-classifiers Man page
network-scores Man page
network.score Source code
nnodes Man page Source code
noattr Source code
node operations Man page
node ordering utilities Man page
node.ordering Man page Source code
nodes Man page
nodes,bn-method Man page
nodes,bn.fit-method Man page
nodes,bn.naive-method Man page
nodes,bn.tan-method Man page
nodes<- Man page
nodes<-,bn-method Man page
nodes<-,bn.fit-method Man page
nodes<-,bn.naive-method Man page
nodes<-,bn.tan-method Man page
normalize.cpt Source code
nparams Man page Source code
nparams.backend Source code
nparams.fitted Source code
ntests Man page Source code
obs.per.cell Source code
ordered.graph Source code
ordering2blacklist Man page Source code
out.degree Man page Source code
outgoing.arcs Man page Source code
parents Man page Source code
parents<- Man page
path Man page
path,bn-method Man page
path,bn.fit-method Man page
path,bn.naive-method Man page
path,bn.tan-method Man page
path.exists Man page Source code
pc.heuristic Source code
pc.stable Man page Source code
pc.stable.backend Source code
pcalg integration Man page
pdag2dag Man page Source code
pdag2dag.backend Source code
per.node.score Source code
perturb.backend Source code
plot.bn Man page Source code
plot.bn.fit Source code
plot.bn.kcv Man page Source code
plot.bn.kcv.list Man page Source code
plot.bn.strength Man page Source code
predict.backend Source code
predict.bn.fit Man page Source code
predict.bn.naive Man page Source code
predict.bn.tan Man page
predictive.correlation Source code
print.bn Source code
print.bn.fit Source code
print.bn.fit.cgnode Source code
print.bn.fit.dnode Source code
print.bn.fit.gnode Source code
print.bn.kcv Source code
print.bn.kcv.list Source code
print.bn.tan Source code
project.distributions Source code
query.partitioning Source code
random.graph Man page Source code
random.graph.backend Source code
rbn Man page Source code
rbn.backend Source code
read.bif Man page Source code
read.dsc Man page Source code
read.foreign.backend Source code
read.net Man page Source code
reduce.fitted Source code
reduce.predictors.for.exact.inference Source code
remove.node Man page Source code
rename.nodes Man page Source code
reorder.data.and.metadata Source code
reset.test.counter Man page Source code
residuals.bn.fit Man page Source code
residuals.bn.fit.cgnode Man page
residuals.bn.fit.dnode Man page Source code
residuals.bn.fit.gnode Man page Source code
reverse.arc Man page Source code
reverse.arc.backend Source code
reversible.arcs Man page Source code
robust.score.difference Source code
root.leaf.nodes Source code
root.nodes Man page Source code
roundrobin.test Source code
rsmax2 Man page Source code
sanitize.levels Source code
sanitize.plot.dots Source code
score Man page
score,bn-method Man page
score,bn.naive-method Man page
score,bn.tan-method Man page
score-based algorithms Man page
score.delta Source code
set.arc Man page Source code
set.arc.direction Source code
set.edge Man page Source code
set.edge.backend Source code
set2blacklist Man page Source code
shd Man page Source code
shielded.colliders Man page Source code
si.hiton.pc Man page Source code
si.hiton.pc.backend Source code
si.hiton.pc.backward Source code
si.hiton.pc.heuristic Source code
sigma Man page
sigma.bn.fit Man page Source code
sigma.bn.fit.cgnode Man page Source code
sigma.bn.fit.dnode Source code
sigma.bn.fit.gnode Man page Source code
single-node local discovery Man page
skeleton Man page Source code
slaves.setup Source code
smaller Source code
smartSapply Source code
spouses Man page Source code
strength.plot Man page Source code
strength2lwd Source code
structural.em Man page Source code
structural.hamming.distance Source code
structure learning Man page
structure-learning Man page
subgraph Man page Source code
subgraph.backend Source code
subsets Source code
tabu Man page Source code
tabu.search Source code
tan.backend Source code
targeted.exact.discrete.prediction Source code
test.counter Man page Source code
threshold Source code
tiers.backend Source code
tiers2blacklist Man page Source code
topological.ordering Source code
tree.bayes Man page Source code
tree.size Source code
tryMethod Source code
underlined Source code
undirected.arcs Man page Source code
unshielded.colliders Man page Source code
vstruct.apply Source code
vstruct.detect Source code
vstructs Man page Source code
wcat Source code
weighting.distribution Source code
weighting.sampling Source code
which.directed Source code
which.listed Source code
which.undirected Source code
whitelist Man page Source code
whitelists and blacklists Man page
whitelists-blacklists Man page
write.bif Man page Source code
write.dot Man page Source code
write.dot.backend Source code
write.dsc Man page Source code
write.foreign.backend Source code
write.net Man page Source code
bnlearn documentation built on Sept. 8, 2023, 5:46 p.m.

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