get_variant_by_location: Get Variant By Location

In gtexr: Query the GTEx Portal API

Get Variant By Location

Description

This service allows the user to query information about variants on a certain chromosome at a certain location.

GTEx Portal API documentation

Usage

get_variant_by_location(
  start,
  end,
  chromosome,
  sortBy = "pos",
  sortDirection = "asc",
  page = 0,
  itemsPerPage = 250
)

Arguments

start	Integer.
end	Integer.
chromosome	String. One of "chr1", "chr2", "chr3", "chr4", "chr5", "chr6", "chr7", "chr8", "chr9", "chr10", "chr11", "chr12", "chr13", "chr14", "chr15", "chr16", "chr17", "chr18", "chr19", "chr20", "chr21", "chr22", "chrM", "chrX", "chrY".
sortBy	String. Options: "sampleId", "ischemicTime", "aliquotId", "tissueSampleId", "hardyScale", "pathologyNotes", "ageBracket", "tissueSiteDetailId", "sex".
sortDirection	String. Options: "asc", "desc". Default = "asc".
page	Integer (default = 0).
itemsPerPage	Integer (default = 250).

Value

A tibble.

See Also

Other Datasets Endpoints: get_annotation(), get_collapsed_gene_model_exon(), get_downloads_page_data(), get_file_list(), get_full_get_collapsed_gene_model_exon(), get_functional_annotation(), get_linkage_disequilibrium_by_variant_data(), get_linkage_disequilibrium_data(), get_sample_datasets_endpoints(), get_subject(), get_tissue_site_detail(), get_variant()

Examples

get_variant_by_location(start = 153209600,
                        end = 153209700,
                        chromosome = "chr1")

gtexr documentation built on Sept. 19, 2024, 5:06 p.m.