API for onemap
Construction of Genetic Maps in Experimental Crosses
| Global functions | |
|---|---|
| .onAttach | Source code |
| Bonferroni_alpha | Man page Source code |
| acum | Man page Source code |
| add_marker | Man page Source code |
| add_redundants | Man page Source code |
| adjust_rf_ril | Source code |
| avoid_reverse | Source code |
| calc.maps.pc | Source code |
| calc.maps.sphere | Source code |
| calc.nnfit | Source code |
| calc.nnfit.from.file | Source code |
| calc.nnfit.loci | Source code |
| calc.pair.rf.lod | Source code |
| check_data | Man page Source code |
| check_linkage | Source code |
| check_twopts | Man page Source code |
| codif_data | Source code |
| comb | Source code |
| comb_ger | Source code |
| combine_onemap | Man page Source code |
| compare | Man page Source code |
| compare_inbred_bc | Source code |
| compare_inbred_f2 | Source code |
| compare_outcross | Source code |
| convert.polar | Source code |
| create_data_bins | Man page Source code |
| create_dataframe_for_plot_outcross | Man page Source code |
| create_depths_profile | Man page Source code |
| create_probs | Man page Source code |
| diplo | Source code |
| dmap | Source code |
| draw.try | Source code |
| draw_map | Man page Source code |
| draw_map2 | Man page Source code |
| draw_order | Source code |
| drop_marker | Man page Source code |
| edit_order_onemap | Man page Source code |
| empty_onemap_obj | Man page Source code |
| est_map_hmm_bc | Source code |
| est_map_hmm_f2 | Source code |
| est_map_hmm_out | Man page Source code |
| est_rf_bc | Source code |
| est_rf_out | Source code |
| estimate.map | Source code |
| export_mappoly_genoprob | Man page Source code |
| export_viewpoly | Man page Source code |
| extract_depth | Man page Source code |
| filter_2pts_gaps | Man page Source code |
| filter_missing | Man page Source code |
| filter_prob | Man page Source code |
| find_bins | Man page Source code |
| generate_overlapping_batches | Man page Source code |
| get.nearest.informative | Source code |
| get_bins | Source code |
| get_mat_rf_in | Source code |
| get_mat_rf_out | Source code |
| get_twopt_info | Source code |
| get_vec_rf_in | Source code |
| get_vec_rf_out | Source code |
| group | Man page Source code |
| group_seq | Man page Source code |
| group_upgma | Man page Source code |
| haldane | Man page Source code |
| keep_only_selected_mks | Man page Source code |
| kosambi | Man page Source code |
| load_onemap_sequences | Man page Source code |
| make_seq | Man page Source code |
| map | Man page Source code |
| map.to.interval | Source code |
| map_avoid_unlinked | Man page Source code |
| map_overlapping_batches | Man page Source code |
| map_save_ram | Man page Source code |
| mapmaker_example_f2 | Man page |
| marker_type | Man page Source code |
| mds_onemap | Man page Source code |
| onemap_example_bc | Man page |
| onemap_example_f2 | Man page |
| onemap_example_out | Man page |
| onemap_example_riself | Man page |
| onemap_read_vcfR | Man page Source code |
| ord_by_geno | Man page Source code |
| order_seq | Man page Source code |
| parents_haplotypes | Man page Source code |
| perm_pars | Source code |
| perm_tot | Source code |
| phases | Source code |
| pick_batch_sizes | Man page Source code |
| plot.group.upgma | Man page Source code |
| plot.onemap | Man page Source code |
| plot.onemap_progeny_haplotypes | Man page Source code |
| plot.onemap_progeny_haplotypes_counts | Man page |
| plot.onemap_segreg_test | Man page Source code |
| plot_by_segreg_type | Man page Source code |
| plot_genome_vs_cm | Man page Source code |
| print.compare | Man page Source code |
| print.group | Man page Source code |
| print.group.upgma | Man page Source code |
| print.group_seq | Man page Source code |
| print.onemap | Man page |
| print.onemap_bin | Man page |
| print.onemap_segreg_test | Man page Source code |
| print.order | Man page Source code |
| print.rf_2pts | Man page Source code |
| print.sequence | Man page Source code |
| print.try | Man page Source code |
| progeny_haplotypes | Man page Source code |
| progeny_haplotypes_counts | Man page |
| rcd | Man page Source code |
| read_mapmaker | Man page |
| read_onemap | Man page |
| record | Man page Source code |
| rem_amb_ph | Source code |
| remove_inds | Man page Source code |
| return_geno | Source code |
| return_geno_ref_alt | Source code |
| rf_2pts | Man page Source code |
| rf_graph_table | Man page Source code |
| rf_snp_filter_onemap | Man page Source code |
| ripple_seq | Man page Source code |
| ripple_seq_inbred | Source code |
| ripple_seq_outcross | Source code |
| rm_dupli_mks | Man page Source code |
| save_onemap_sequences | Man page Source code |
| seeded_map | Man page Source code |
| select_segreg | Man page Source code |
| seq_by_type | Man page Source code |
| ser_ord | Source code |
| seriation | Man page Source code |
| set_map_fun | Man page Source code |
| simu_example_bc | Man page |
| simu_example_f2 | Man page |
| simu_example_out | Man page |
| sort_by_pos | Man page Source code |
| split_2pts | Man page Source code |
| split_onemap | Man page Source code |
| suggest_lod | Man page Source code |
| summary_maps_onemap | Man page Source code |
| test_segregation | Man page Source code |
| test_segregation_of_a_marker | Man page Source code |
| try_seq | Man page Source code |
| try_seq_by_seq | Man page Source code |
| try_seq_inbred_bc | Source code |
| try_seq_inbred_f2 | Source code |
| try_seq_outcross | Source code |
| ug | Man page Source code |
| vcf2raw | Man page Source code |
| vcf_example_bc | Man page |
| vcf_example_f2 | Man page |
| vcf_example_out | Man page |
| vcf_example_riself | Man page |
| write_map | Man page Source code |
| write_onemap_raw | Man page Source code |
