checkIfGainOrLoseAfterAlt: Check if the number of uAUG, ployA signal, or Kozak in UTR...

In utr.annotation: Annotate Variants in the Untranslated Regions

Description

checkIfGainOrLoseAfterAlt check if the number of uAUG, ployA signal, or Kozak in UTR changes after alt. This function only works to compare two "numeric" columns

Usage

checkIfGainOrLoseAfterAlt(variantsTable, colNameBeforeAlt, colNameAfterAlt)

Arguments

variantsTable	variantsTable: variants table
colNameBeforeAlt	the name of the column before alter, type of a string
colNameAfterAlt	the name of the column after alter, type of a string

Value

A list containing whether the number gained, lost, or equal after alter. If colNameBeforeAlt or colNameAfterAlt does not exist in the variantsTable, return NA

utr.annotation documentation built on Aug. 23, 2021, 9:06 a.m.