predictMRLOneVariant: Predict MRL for one variant

In utr.annotation: Annotate Variants in the Untranslated Regions

Description

Predict MRL for one variant

Usage

predictMRLOneVariant(variant, seqTable, transcriptIdColumn, model)

Arguments

variant	A variant
seqTable	corresponding 5' UTR sequence table from Ensembl DB. Have two columns: ensembl_transcript_id and seq
transcriptIdColumn	the name of the transcript id column
model	MRL prediction model

Value

MRL prediction of reference 5' UTR for the input variant

utr.annotation documentation built on Aug. 23, 2021, 9:06 a.m.