queryEnsemblInfo: query transcrips regions, utr sequences, and coding sequences...
In utr.annotation: Annotate Variants in the Untranslated Regions
Description
Usage
Arguments
Value
View source: R/get_genome_db.R
Description
queryEnsemblInfo query transcrips regions, utr sequences, and coding sequences from Ensembl database and save rds into sepecified directory
Usage
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queryEnsemblInfo(
transcriptIds,
species,
ensemblVersion,
dataDir,
verbose = FALSE
)
Arguments
transcriptIds
Ensembl transcript ids
species
human or mouse
ensemblVersion
Ensembl database version
dataDir
path to store database information
verbose
Whether print diagnostic messages. The default is FALSE.
Value
save all Db objects into dataDir
utr.annotation documentation built on Aug. 23, 2021, 9:06 a.m.
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Description Usage Arguments Value
View source: R/get_genome_db.R
Description
queryEnsemblInfo query transcrips regions, utr sequences, and coding sequences from Ensembl database and save rds into sepecified directory
Usage
1 2 3 4 5 6 7 | queryEnsemblInfo(
transcriptIds,
species,
ensemblVersion,
dataDir,
verbose = FALSE
)
|
Arguments
transcriptIds |
Ensembl transcript ids |
species |
human or mouse |
ensemblVersion |
Ensembl database version |
dataDir |
path to store database information |
verbose |
Whether print diagnostic messages. The default is FALSE. |
Value
save all Db objects into dataDir
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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