checkIfLostCodonAfterAlt: Check if the codon lost after alt.
In utr.annotation: Annotate Variants in the Untranslated Regions
Description
Usage
Arguments
Value
Description
Check if the codon lost after alt.
Usage
1
checkIfLostCodonAfterAlt(variantsTable, colNameAfterAlt, patterns)
Arguments
variantsTable
variants table
colNameAfterAlt
the name of the codon column after alter, type of a string. For example, name of column for the stop codon sequence after alt
patterns
codon patterns, "ATG" for start codon, c("TAG", "TAA", "TGA") for stop codon
Value
A list containing TURE or FALSE or NA (if the codon sequence is NA). If colNameAfterAlt does not exist in the variantsTable, return NA
utr.annotation documentation built on Aug. 23, 2021, 9:06 a.m.
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Description Usage Arguments Value
Description
Check if the codon lost after alt.
Usage
1 | checkIfLostCodonAfterAlt(variantsTable, colNameAfterAlt, patterns)
|
Arguments
variantsTable |
variants table |
colNameAfterAlt |
the name of the codon column after alter, type of a string. For example, name of column for the stop codon sequence after alt |
patterns |
codon patterns, "ATG" for start codon, c("TAG", "TAA", "TGA") for stop codon |
Value
A list containing TURE or FALSE or NA (if the codon sequence is NA). If colNameAfterAlt does not exist in the variantsTable, return NA
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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